Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46891 * 110.99923 * 2 1 4 4 H 1.09001 * 109.47053 * 39.81296 * 3 2 1 5 5 C 1.50706 * 109.47281 * 159.81033 * 3 2 1 6 6 H 1.07994 * 119.99950 * 116.54452 * 5 3 2 7 7 C 1.37879 * 119.99803 * 296.54785 * 5 3 2 8 8 N 1.31517 * 119.99801 * 171.68913 * 7 5 3 9 9 Si 1.86794 * 120.00082 * 351.69081 * 7 5 3 10 10 H 1.48500 * 109.47578 * 273.40018 * 9 7 5 11 11 H 1.48505 * 109.47461 * 33.40067 * 9 7 5 12 12 H 1.48500 * 109.47051 * 153.40219 * 9 7 5 13 13 C 1.50693 * 109.47356 * 279.81203 * 3 2 1 14 14 C 1.35317 * 126.12655 * 325.79343 * 13 3 2 15 15 C 1.39871 * 107.92277 * 179.97438 * 14 13 3 16 16 N 1.30839 * 108.20144 * 359.97438 * 15 14 13 17 17 N 1.34947 * 126.13018 * 145.48216 * 13 3 2 18 18 C 1.46504 * 126.03521 * 0.03744 * 17 13 3 19 19 H 1.09000 * 109.47148 * 186.57252 * 1 2 3 20 20 H 1.08996 * 109.47767 * 306.57863 * 1 2 3 21 21 H 1.09000 * 109.46737 * 66.57925 * 1 2 3 22 22 H 1.00898 * 111.00096 * 236.04486 * 2 1 3 23 23 H 0.97000 * 119.99813 * 180.02562 * 8 7 5 24 24 H 1.08001 * 126.03896 * 359.93574 * 14 13 3 25 25 H 1.08001 * 125.90153 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.47394 * 90.00144 * 18 17 13 27 27 H 1.09004 * 109.47017 * 209.99838 * 18 17 13 28 28 H 1.09002 * 109.46914 * 329.99472 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 1 1.3886 1.9934 0.6580 5 6 3.4204 1.3625 0.4904 6 1 4.2197 1.6706 -0.1673 7 6 3.7037 0.9610 1.7786 8 7 4.9526 0.7961 2.1564 9 14 2.3136 0.6512 2.9873 10 1 1.9438 1.9256 3.6538 11 1 1.1359 0.1131 2.2601 12 1 2.7558 -0.3315 4.0091 13 6 1.9494 1.9271 -1.3999 14 6 2.1370 1.2272 -2.5427 15 6 2.0111 2.1146 -3.6166 16 7 1.7565 3.3045 -3.1358 17 7 1.7080 3.2108 -1.7389 18 6 1.4446 4.3126 -0.8098 19 1 -0.3633 -1.0209 0.1176 20 1 -0.3634 0.6124 0.8252 21 1 -0.3633 0.4085 -0.9430 22 1 1.8306 -0.5261 -0.7813 23 1 5.1518 0.5132 3.0626 24 1 2.3474 0.1702 -2.6132 25 1 2.1074 1.8613 -4.6620 26 1 2.3859 4.7874 -0.5331 27 1 0.7955 5.0451 -1.2896 28 1 0.9564 3.9250 0.0843 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = 63.895214 kcal Electronic energy + Delta-G solvation = -12516.473002 eV Core-core repulsion = 10375.665445 eV Total energy + Delta-G solvation = -2140.807556 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.09174 -37.48916 -34.35894 -34.05857 -31.40462 -29.12891 -27.53333 -25.55709 -23.96325 -21.82409 -20.41149 -19.18902 -17.92756 -16.54321 -16.11138 -15.71741 -15.38235 -15.12746 -14.49405 -14.37136 -14.30485 -13.53372 -13.17981 -13.13180 -12.71139 -12.50469 -12.32467 -11.76958 -11.64696 -11.39855 -10.68693 -10.07978 -9.34522 -9.11150 -8.24954 -6.37832 1.04566 1.47708 1.54644 1.74752 1.78469 1.99961 2.54060 3.06475 3.74003 3.86359 3.95536 4.33300 4.37094 4.46566 4.61672 4.65243 4.74966 4.87598 4.92677 5.05314 5.28055 5.50678 5.85408 6.09862 6.21475 6.33061 6.72732 6.77157 6.86787 7.37840 8.88895 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.039609 B = 0.013838 C = 0.012892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.744626 B = 2022.866702 C = 2171.385442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.682 5.682 3 C 0.256 3.744 4 H 0.049 0.951 5 C -0.514 4.514 6 H 0.020 0.980 7 C 0.039 3.961 8 N -0.943 5.943 9 Si 0.944 3.056 10 H -0.285 1.285 11 H -0.198 1.198 12 H -0.304 1.304 13 C 0.088 3.912 14 C -0.303 4.303 15 C 0.046 3.954 16 N -0.341 5.341 17 N -0.383 5.383 18 C 0.096 3.904 19 H 0.079 0.921 20 H 0.057 0.943 21 H 0.016 0.984 22 H 0.340 0.660 23 H 0.266 0.734 24 H 0.149 0.851 25 H 0.213 0.787 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 1.388 -4.901 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.313 5.313 3 C 0.146 3.854 4 H 0.066 0.934 5 C -0.553 4.553 6 H 0.038 0.962 7 C -0.161 4.161 8 N -0.582 5.582 9 Si 0.767 3.233 10 H -0.211 1.211 11 H -0.119 1.119 12 H -0.231 1.231 13 C -0.043 4.043 14 C -0.332 4.332 15 C -0.139 4.139 16 N -0.163 5.163 17 N -0.165 5.165 18 C -0.044 4.044 19 H 0.097 0.903 20 H 0.075 0.925 21 H 0.035 0.965 22 H 0.159 0.841 23 H 0.075 0.925 24 H 0.167 0.833 25 H 0.230 0.770 26 H 0.089 0.911 27 H 0.124 0.876 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.052 2.617 -4.287 12.140 hybrid contribution 0.327 -0.650 -0.046 0.730 sum -10.725 1.967 -4.334 11.734 Atomic orbital electron populations 1.22268 0.88499 1.02390 0.99282 1.61297 1.07053 1.13645 1.49336 1.18051 0.94892 0.86948 0.85550 0.93380 1.20716 0.90793 1.45953 0.97794 0.96153 1.25779 0.97840 0.92282 1.00204 1.70098 1.21240 1.47357 1.19474 0.85872 0.82886 0.77411 0.77089 1.21143 1.11941 1.23074 1.22606 0.96808 0.85430 0.99451 1.21315 1.18827 1.01953 0.91099 1.24244 0.98698 0.89704 1.01232 1.77121 1.27265 1.23505 0.88367 1.48689 1.55194 1.07681 1.04949 1.21996 1.02936 0.87941 0.91549 0.90263 0.92452 0.96498 0.84084 0.92548 0.83343 0.77044 0.91102 0.87591 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.75 127.69 1.24 2.03 15 2 N -0.68 -26.70 4.59 -522.50 -2.40 -29.09 15 3 C 0.26 11.22 1.58 43.42 0.07 11.29 15 4 H 0.05 2.05 5.59 -2.39 -0.01 2.04 15 5 C -0.51 -28.40 9.26 25.60 0.24 -28.16 15 6 H 0.02 1.30 7.98 -2.91 -0.02 1.27 15 7 C 0.04 2.19 5.46 84.65 0.46 2.66 15 8 N -0.94 -58.05 13.96 21.45 0.30 -57.75 15 9 Si 0.94 42.73 26.82 68.60 1.84 44.57 15 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 11 H -0.20 -7.99 4.59 99.48 0.46 -7.54 15 12 H -0.30 -14.15 7.11 99.48 0.71 -13.44 15 13 C 0.09 3.62 5.53 41.40 0.23 3.85 15 14 C -0.30 -11.43 9.99 21.99 0.22 -11.21 15 15 C 0.05 1.57 12.03 85.24 1.03 2.60 15 16 N -0.34 -12.93 12.58 -57.02 -0.72 -13.65 15 17 N -0.38 -14.82 4.01 -356.02 -1.43 -16.24 15 18 C 0.10 2.95 11.27 127.77 1.44 4.39 15 19 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 20 H 0.06 1.76 7.36 -2.39 -0.02 1.74 15 21 H 0.02 0.50 7.96 -2.39 -0.02 0.49 15 22 H 0.34 12.85 7.17 -89.70 -0.64 12.21 15 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 24 H 0.15 5.15 7.18 -2.91 -0.02 5.13 15 25 H 0.21 5.21 8.06 -2.91 -0.02 5.18 15 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.11 2.59 8.14 -2.38 -0.02 2.57 15 28 H 0.09 2.64 6.98 -2.39 -0.02 2.63 15 Total: -1.00 -68.14 236.64 2.79 -65.36 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.26 Total: 19.37 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.93 Total: -12.57 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -4.24 Total: -116.73 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.84 Total: 44.57 kcal Total: -68.14 2.79 -65.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.252 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds