Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47090 * 2 1 4 4 C 1.35310 * 125.86517 * 125.00618 * 3 2 1 5 5 C 1.35353 * 106.17519 * 179.97438 * 4 3 2 6 6 C 1.50692 * 126.75655 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47525 * 154.99621 * 6 5 4 8 8 C 1.53004 * 109.46941 * 34.99725 * 6 5 4 9 9 C 1.50702 * 109.47335 * 275.00030 * 6 5 4 10 10 H 1.07995 * 119.99645 * 5.62312 * 9 6 5 11 11 C 1.37879 * 120.00229 * 185.61674 * 9 6 5 12 12 N 1.31508 * 120.00233 * 197.59941 * 11 9 6 13 13 Si 1.86804 * 119.99610 * 17.60508 * 11 9 6 14 14 H 1.48497 * 109.46968 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47202 * 59.99622 * 13 11 9 16 16 H 1.48504 * 109.47025 * 299.99526 * 13 11 9 17 17 N 1.33776 * 106.49116 * 0.25870 * 5 4 3 18 18 N 1.28632 * 108.89053 * 359.56370 * 17 5 4 19 19 H 1.09008 * 109.46606 * 299.99972 * 1 2 3 20 20 H 1.09002 * 109.47277 * 59.99564 * 1 2 3 21 21 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47044 * 239.99710 * 2 1 3 23 23 H 1.09000 * 109.46818 * 120.00195 * 2 1 3 24 24 H 1.08000 * 126.91241 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.46833 * 66.02990 * 8 6 5 26 26 H 1.09004 * 109.47269 * 186.03182 * 8 6 5 27 27 H 1.09002 * 109.47352 * 306.03107 * 8 6 5 28 28 H 0.97006 * 119.99926 * 354.79791 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0543 3.2075 0.5243 6 6 3.9231 4.2323 1.2067 7 1 4.2205 4.9943 0.4862 8 6 5.1706 3.5491 1.7706 9 6 3.1522 4.8767 2.3300 10 1 2.1689 4.5125 2.5884 11 6 3.7024 5.9310 3.0277 12 7 3.2140 6.2692 4.2010 13 14 5.1414 6.8789 2.3064 14 1 5.5447 7.9564 3.2452 15 1 4.7386 7.4785 1.0089 16 1 6.2844 5.9555 2.0914 17 7 2.3027 3.3941 -0.5666 18 7 1.7061 2.2915 -0.8548 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 3.3273 1.4201 1.7429 25 1 5.7829 3.1759 0.9496 26 1 5.7454 4.2674 2.3552 27 1 4.8723 2.7172 2.4086 28 1 2.4205 5.8274 4.5418 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261113107.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = 86.072032 kcal Electronic energy + Delta-G solvation = -12148.780754 eV Core-core repulsion = 10008.934857 eV Total energy + Delta-G solvation = -2139.845897 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.56059 -35.50982 -34.24337 -31.64502 -30.46476 -28.81220 -24.87426 -24.29826 -22.59545 -20.77537 -19.35073 -17.38151 -16.92127 -15.90316 -14.45445 -14.23409 -13.93737 -13.47223 -12.82865 -12.68362 -12.36376 -11.94075 -11.78656 -11.37192 -11.16940 -10.64644 -10.47420 -10.22487 -9.73967 -9.66860 -9.44433 -8.93614 -8.41662 -8.07644 -6.41781 -4.03006 2.21500 2.81400 3.41647 3.43364 3.51410 3.66783 4.52263 4.52946 4.79579 5.00626 5.08126 5.30874 5.43054 5.53938 5.74292 5.94128 6.05417 6.25525 6.41751 6.51425 6.75466 7.04181 7.16371 7.20514 7.48207 8.09254 8.41102 8.92888 9.23320 9.64297 10.97298 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.061224 B = 0.009567 C = 0.009233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.227084 B = 2925.900789 C = 3031.990493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.303 5.303 4 C -0.068 4.068 5 C 0.042 3.958 6 C 0.088 3.912 7 H 0.039 0.961 8 C -0.144 4.144 9 C -0.588 4.588 10 H 0.053 0.947 11 C 0.032 3.968 12 N -0.906 5.906 13 Si 1.045 2.955 14 H -0.286 1.286 15 H -0.281 1.281 16 H -0.273 1.273 17 N -0.277 5.277 18 N -0.108 5.108 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.182 0.818 25 H 0.025 0.975 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 -12.760 -5.730 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.100 5.100 4 C -0.217 4.217 5 C -0.095 4.095 6 C 0.067 3.933 7 H 0.057 0.943 8 C -0.202 4.202 9 C -0.626 4.626 10 H 0.072 0.928 11 C -0.172 4.172 12 N -0.540 5.540 13 Si 0.874 3.126 14 H -0.212 1.212 15 H -0.207 1.207 16 H -0.199 1.199 17 N -0.143 5.143 18 N -0.086 5.086 19 H 0.082 0.918 20 H 0.092 0.908 21 H 0.096 0.904 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.199 0.801 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.175 -11.242 -6.670 13.073 hybrid contribution -0.717 -1.754 0.769 2.045 sum -0.542 -12.996 -5.901 14.283 Atomic orbital electron populations 1.22065 0.93246 1.03039 1.04074 1.21888 0.96537 0.77612 1.04419 1.47264 1.31603 1.11398 1.19692 1.23275 1.01749 0.96660 1.00055 1.22503 0.99588 0.93913 0.93521 1.17553 0.90744 0.90468 0.94539 0.94258 1.22233 0.98074 1.00707 0.99210 1.21823 1.04719 1.18708 1.17348 0.92832 1.25770 1.02524 0.95452 0.93500 1.70871 1.22299 1.46008 1.14855 0.84044 0.75941 0.76635 0.76023 1.21205 1.20680 1.19912 1.75014 1.09197 1.14969 1.15123 1.78096 1.21807 0.93262 1.15438 0.91760 0.90819 0.90415 0.89038 0.88233 0.80117 0.95579 0.92031 0.93710 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.04 37.16 0.37 -1.30 15 2 C 0.12 1.27 7.17 -4.04 -0.03 1.25 15 3 N -0.30 -5.22 3.44 -61.26 -0.21 -5.43 15 4 C -0.07 -1.31 10.73 -17.05 -0.18 -1.49 15 5 C 0.04 0.98 6.10 -82.78 -0.50 0.47 15 6 C 0.09 2.18 2.34 -92.92 -0.22 1.96 15 7 H 0.04 1.00 6.79 -51.93 -0.35 0.65 15 8 C -0.14 -3.09 8.59 37.16 0.32 -2.77 15 9 C -0.59 -16.84 8.81 -34.44 -0.30 -17.14 15 10 H 0.05 1.69 7.99 -52.49 -0.42 1.27 15 11 C 0.03 0.93 5.29 -17.82 -0.09 0.84 15 12 N -0.91 -27.91 13.69 55.43 0.76 -27.15 15 13 Si 1.05 25.29 26.30 -169.99 -4.47 20.82 15 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 15 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 16 H -0.27 -5.97 5.76 56.52 0.33 -5.65 15 17 N -0.28 -6.63 12.41 33.29 0.41 -6.22 15 18 N -0.11 -2.23 12.91 60.35 0.78 -1.45 15 19 H 0.06 0.74 8.14 -51.92 -0.42 0.32 15 20 H 0.07 0.84 8.12 -51.93 -0.42 0.42 15 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.10 0.82 8.07 -51.93 -0.42 0.40 15 24 H 0.18 2.90 7.33 -52.49 -0.38 2.52 15 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.06 1.36 4.88 -51.93 -0.25 1.11 15 27 H 0.04 0.89 7.07 -51.93 -0.37 0.52 15 28 H 0.27 8.20 8.73 -40.82 -0.36 7.85 15 LS Contribution 239.35 15.07 3.61 3.61 Total: -1.00 -33.50 239.35 -3.30 -36.80 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.54 Total: -2.79 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.64 Total: -18.18 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 1.74 Total: -40.25 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.47 Total: 20.82 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.50 -3.30 -36.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113107.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.870 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds