Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47090 * 2 1 4 4 C 1.35310 * 125.86517 * 125.00618 * 3 2 1 5 5 C 1.35353 * 106.17519 * 179.97438 * 4 3 2 6 6 C 1.50692 * 126.75655 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47525 * 154.99621 * 6 5 4 8 8 C 1.53004 * 109.46941 * 34.99725 * 6 5 4 9 9 C 1.50702 * 109.47335 * 275.00030 * 6 5 4 10 10 H 1.07995 * 119.99645 * 5.62312 * 9 6 5 11 11 C 1.37879 * 120.00229 * 185.61674 * 9 6 5 12 12 N 1.31508 * 120.00233 * 197.59941 * 11 9 6 13 13 Si 1.86804 * 119.99610 * 17.60508 * 11 9 6 14 14 H 1.48497 * 109.46968 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47202 * 59.99622 * 13 11 9 16 16 H 1.48504 * 109.47025 * 299.99526 * 13 11 9 17 17 N 1.33776 * 106.49116 * 0.25870 * 5 4 3 18 18 N 1.28632 * 108.89053 * 359.56370 * 17 5 4 19 19 H 1.09008 * 109.46606 * 299.99972 * 1 2 3 20 20 H 1.09002 * 109.47277 * 59.99564 * 1 2 3 21 21 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47044 * 239.99710 * 2 1 3 23 23 H 1.09000 * 109.46818 * 120.00195 * 2 1 3 24 24 H 1.08000 * 126.91241 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.46833 * 66.02990 * 8 6 5 26 26 H 1.09004 * 109.47269 * 186.03182 * 8 6 5 27 27 H 1.09002 * 109.47352 * 306.03107 * 8 6 5 28 28 H 0.97006 * 119.99926 * 354.79791 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0543 3.2075 0.5243 6 6 3.9231 4.2323 1.2067 7 1 4.2205 4.9943 0.4862 8 6 5.1706 3.5491 1.7706 9 6 3.1522 4.8767 2.3300 10 1 2.1689 4.5125 2.5884 11 6 3.7024 5.9310 3.0277 12 7 3.2140 6.2692 4.2010 13 14 5.1414 6.8789 2.3064 14 1 5.5447 7.9564 3.2452 15 1 4.7386 7.4785 1.0089 16 1 6.2844 5.9555 2.0914 17 7 2.3027 3.3941 -0.5666 18 7 1.7061 2.2915 -0.8548 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 3.3273 1.4201 1.7429 25 1 5.7829 3.1759 0.9496 26 1 5.7454 4.2674 2.3552 27 1 4.8723 2.7172 2.4086 28 1 2.4205 5.8274 4.5418 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261113107.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = 61.627675 kcal Electronic energy + Delta-G solvation = -12149.840741 eV Core-core repulsion = 10008.934857 eV Total energy + Delta-G solvation = -2140.905884 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.09802 -37.06519 -35.84983 -33.70075 -31.68229 -30.46118 -26.81253 -25.46483 -24.38663 -22.19125 -21.07054 -19.53810 -18.24906 -17.28160 -16.08263 -15.64448 -15.34064 -15.24458 -14.60403 -13.92316 -13.86717 -13.26245 -13.22771 -12.98523 -12.50006 -12.31208 -12.29487 -11.90558 -11.51864 -11.43793 -11.09366 -10.86318 -10.42557 -9.93991 -8.70813 -6.34179 0.72955 1.50172 1.59976 1.60416 1.71842 1.78806 2.51360 3.09753 3.51155 3.73799 3.96777 4.15632 4.27610 4.41660 4.55805 4.69348 4.71162 4.82642 4.90563 5.03995 5.15860 5.29362 5.42432 5.71592 5.83349 5.99394 6.05987 6.56591 7.41917 7.63882 8.65750 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.061224 B = 0.009567 C = 0.009233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.227084 B = 2925.900789 C = 3031.990493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.286 5.286 4 C -0.051 4.051 5 C 0.001 3.999 6 C 0.087 3.913 7 H 0.028 0.972 8 C -0.137 4.137 9 C -0.588 4.588 10 H 0.008 0.992 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 1.082 2.918 14 H -0.288 1.288 15 H -0.275 1.275 16 H -0.230 1.230 17 N -0.323 5.323 18 N -0.119 5.119 19 H 0.044 0.956 20 H 0.054 0.946 21 H 0.118 0.882 22 H 0.119 0.881 23 H 0.136 0.864 24 H 0.215 0.785 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 -15.039 -6.415 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.082 5.082 4 C -0.201 4.201 5 C -0.137 4.137 6 C 0.065 3.935 7 H 0.046 0.954 8 C -0.195 4.195 9 C -0.626 4.626 10 H 0.026 0.974 11 C -0.213 4.213 12 N -0.572 5.572 13 Si 0.903 3.097 14 H -0.214 1.214 15 H -0.201 1.201 16 H -0.154 1.154 17 N -0.189 5.189 18 N -0.098 5.098 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.136 0.864 22 H 0.137 0.863 23 H 0.154 0.846 24 H 0.232 0.768 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.559 -13.576 -7.382 15.532 hybrid contribution -1.322 -1.203 0.965 2.031 sum 0.238 -14.779 -6.417 16.114 Atomic orbital electron populations 1.22074 0.92721 1.05098 1.02188 1.22585 0.97024 0.74486 1.07644 1.47789 1.29769 1.12856 1.17805 1.23640 1.00827 0.95436 1.00227 1.22466 1.01089 0.95545 0.94642 1.17458 0.91961 0.91096 0.92935 0.95357 1.22088 0.96493 1.00662 1.00212 1.21953 1.03156 1.18890 1.18614 0.97398 1.27190 1.05022 0.96133 0.93003 1.71005 1.22623 1.46987 1.16617 0.83619 0.74566 0.76208 0.75305 1.21388 1.20064 1.15354 1.74937 1.10572 1.16902 1.16478 1.77970 1.21932 0.93413 1.16448 0.93661 0.92666 0.86371 0.86268 0.84598 0.76797 0.92492 0.92755 0.92380 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.04 71.98 0.72 -2.11 15 2 C 0.10 1.80 7.17 86.38 0.62 2.42 15 3 N -0.29 -9.16 3.44 -347.73 -1.20 -10.36 15 4 C -0.05 -1.82 10.73 83.49 0.90 -0.93 15 5 C 0.00 0.05 6.10 41.59 0.25 0.30 15 6 C 0.09 4.22 2.34 -12.29 -0.03 4.20 15 7 H 0.03 1.43 6.79 -2.39 -0.02 1.41 15 8 C -0.14 -5.46 8.59 71.98 0.62 -4.84 15 9 C -0.59 -34.38 8.81 25.60 0.23 -34.15 15 10 H 0.01 0.50 7.99 -2.91 -0.02 0.48 15 11 C -0.02 -0.92 5.29 84.66 0.45 -0.47 15 12 N -0.94 -59.18 13.69 21.45 0.29 -58.89 15 13 Si 1.08 50.29 26.30 68.60 1.80 52.09 15 14 H -0.29 -13.39 7.11 99.48 0.71 -12.68 15 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 16 H -0.23 -9.09 5.76 99.48 0.57 -8.51 15 17 N -0.32 -15.57 12.41 -48.60 -0.60 -16.18 15 18 N -0.12 -4.85 12.91 37.02 0.48 -4.38 15 19 H 0.04 0.96 8.14 -2.38 -0.02 0.94 15 20 H 0.05 1.17 8.12 -2.39 -0.02 1.15 15 21 H 0.12 1.12 8.14 -2.39 -0.02 1.10 15 22 H 0.12 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.14 1.51 8.07 -2.39 -0.02 1.49 15 24 H 0.22 6.02 7.33 -2.91 -0.02 6.00 15 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.05 2.23 4.88 -2.39 -0.01 2.21 15 27 H 0.06 2.12 7.07 -2.39 -0.02 2.11 15 28 H 0.25 16.10 8.73 -92.70 -0.81 15.30 15 Total: -1.00 -76.06 239.35 5.50 -70.56 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 0.97 Total: 2.73 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.75 Total: -35.58 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.03 Total: -89.80 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.80 Total: 52.09 kcal Total: -76.06 5.50 -70.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113107.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.186 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds