Wall clock time and date at job start Mon Mar 30 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.08002 * 120.00190 * 114.48944 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48501 * 109.46922 * 269.72301 * 8 6 4 10 10 H 1.48493 * 109.47248 * 29.72950 * 8 6 4 11 11 H 1.48501 * 109.46761 * 149.72813 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.40800 * 119.99507 * 119.99685 * 12 2 1 15 15 C 1.40218 * 126.07278 * 0.02794 * 14 12 2 16 16 N 1.30860 * 108.36644 * 179.97438 * 15 14 12 17 17 N 1.40080 * 108.35871 * 359.97438 * 16 15 14 18 18 H 0.97001 * 126.06372 * 180.02562 * 17 16 15 19 19 C 1.35709 * 126.06214 * 179.71341 * 14 12 2 20 20 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 21 21 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 22 22 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 23 23 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 24 24 H 1.08998 * 109.47119 * 90.00142 * 13 12 2 25 25 H 1.08997 * 109.47200 * 210.00474 * 13 12 2 26 26 H 1.09002 * 109.46987 * 330.00474 * 13 12 2 27 27 H 1.08000 * 125.81440 * 359.95229 * 15 14 12 28 28 H 1.08002 * 126.22345 * 359.97438 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5780 -1.6375 1.1338 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4780 2.7771 10 1 0.4676 1.9925 1.4430 11 1 0.3894 1.7412 3.8536 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.8277 -0.0063 -2.1230 15 6 3.2427 1.3298 -2.0283 16 7 3.9807 1.6073 -3.0727 17 7 4.0643 0.4595 -3.8714 18 1 4.5491 0.3800 -4.7078 19 6 3.3496 -0.5245 -3.2636 20 1 -0.3633 0.4141 0.9405 21 1 -0.3634 0.6073 -0.8290 22 1 -0.3633 -1.0217 -0.1115 23 1 2.1679 -1.8620 3.4633 24 1 0.7376 -2.1444 -1.9993 25 1 2.4629 -2.5819 -1.9864 26 1 1.5295 -2.5969 -0.4708 27 1 2.9951 2.0133 -1.2297 28 1 3.2197 -1.5344 -3.6235 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261128337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:16 Heat of formation + Delta-G solvation = 85.756555 kcal Electronic energy + Delta-G solvation = -12356.780196 eV Core-core repulsion = 10216.920619 eV Total energy + Delta-G solvation = -2139.859577 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45787 -36.34202 -32.77145 -30.78980 -30.35360 -28.12566 -25.35688 -24.49305 -21.37645 -20.52890 -18.94094 -17.42557 -17.36333 -14.83835 -14.36762 -14.27665 -13.76779 -13.53815 -13.10052 -12.44841 -12.33045 -11.84754 -11.66065 -11.28564 -10.85894 -10.52772 -10.34521 -9.99138 -9.61969 -9.43991 -9.05788 -8.75835 -8.30039 -6.59505 -6.06047 -4.08736 2.37411 3.33749 3.40791 3.43040 3.55377 3.56450 4.32272 4.48429 5.24312 5.41062 5.49138 5.90300 6.08099 6.18437 6.24230 6.34079 6.51521 6.56615 6.71057 6.85977 6.99227 7.24227 7.78460 7.95423 8.05718 8.31022 8.41596 8.59888 8.96540 9.60222 10.92092 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.012049 C = 0.010817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.331512 B = 2323.257090 C = 2587.964109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.258 3.742 3 H 0.033 0.967 4 C -0.608 4.608 5 H 0.060 0.940 6 C 0.033 3.967 7 N -0.906 5.906 8 Si 1.037 2.963 9 H -0.284 1.284 10 H -0.269 1.269 11 H -0.285 1.285 12 N -0.606 5.606 13 C 0.116 3.884 14 C 0.095 3.905 15 C 0.014 3.986 16 N -0.285 5.285 17 N -0.487 5.487 18 H 0.433 0.567 19 C -0.066 4.066 20 H 0.055 0.945 21 H 0.025 0.975 22 H 0.044 0.956 23 H 0.268 0.732 24 H 0.026 0.974 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.179 0.821 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 0.979 -11.422 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.156 3.844 3 H 0.051 0.949 4 C -0.646 4.646 5 H 0.078 0.922 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.865 3.135 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.211 1.211 12 N -0.321 5.321 13 C -0.028 4.028 14 C -0.014 4.014 15 C -0.176 4.176 16 N -0.109 5.109 17 N -0.203 5.203 18 H 0.276 0.724 19 C -0.214 4.214 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.196 0.804 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.047 2.942 -10.722 11.119 hybrid contribution 0.158 -2.105 -1.015 2.342 sum 0.111 0.837 -11.737 11.767 Atomic orbital electron populations 1.22495 0.99477 1.00044 0.99422 1.18935 0.89780 0.92785 0.82942 0.94915 1.22333 1.39782 1.11336 0.91155 0.92163 1.25693 0.94324 1.05290 0.91890 1.70800 1.44163 1.08219 1.30815 0.84212 0.77354 0.75741 0.76213 1.21091 1.19471 1.21078 1.46084 1.54165 1.09647 1.22249 1.21231 0.97486 0.83110 1.01022 1.17976 0.98989 0.92196 0.92216 1.23606 0.99921 0.95807 0.98230 1.77030 1.21548 1.07605 1.04715 1.45692 1.44701 1.08130 1.21773 0.72410 1.21521 1.06246 0.95635 0.97984 0.92624 0.95632 0.93645 0.92209 0.95594 0.93986 0.91168 0.80373 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.57 37.16 0.32 -3.05 15 2 C 0.26 6.04 2.23 -69.08 -0.15 5.89 15 3 H 0.03 0.77 4.76 -51.93 -0.25 0.53 15 4 C -0.61 -16.60 8.37 -34.44 -0.29 -16.88 15 5 H 0.06 1.80 7.38 -52.49 -0.39 1.41 15 6 C 0.03 0.94 5.33 -17.82 -0.09 0.84 15 7 N -0.91 -27.35 13.70 55.43 0.76 -26.59 15 8 Si 1.04 24.35 26.17 -169.99 -4.45 19.90 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.27 -5.72 5.53 56.52 0.31 -5.41 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 N -0.61 -12.76 2.92 -173.51 -0.51 -13.27 15 13 C 0.12 2.12 9.33 59.85 0.56 2.68 15 14 C 0.10 1.86 6.70 -83.90 -0.56 1.30 15 15 C 0.01 0.27 11.19 -17.22 -0.19 0.07 15 16 N -0.28 -5.14 12.69 30.70 0.39 -4.75 15 17 N -0.49 -7.33 7.41 30.71 0.23 -7.10 15 18 H 0.43 4.72 8.96 -182.61 -1.64 3.08 15 19 C -0.07 -1.07 11.15 -16.62 -0.19 -1.25 15 20 H 0.05 1.22 5.06 -51.93 -0.26 0.96 15 21 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.04 0.95 7.47 -51.93 -0.39 0.56 15 23 H 0.27 8.07 8.73 -40.82 -0.36 7.72 15 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 15 25 H 0.04 0.67 6.87 -51.93 -0.36 0.31 15 26 H 0.07 1.41 6.92 -51.93 -0.36 1.05 15 27 H 0.18 3.29 6.87 -52.49 -0.36 2.93 15 28 H 0.16 2.16 7.25 -52.49 -0.38 1.78 15 LS Contribution 232.06 15.07 3.50 3.50 Total: -1.00 -31.01 232.06 -5.15 -36.15 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.47 Total: 2.56 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.60 Total: -10.40 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.87 Total: -51.71 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.45 Total: 19.90 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.01 -5.15 -36.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.911 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds