Wall clock time and date at job start Mon Mar 30 2020 02:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.08002 * 120.00190 * 114.48944 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48501 * 109.46922 * 269.72301 * 8 6 4 10 10 H 1.48493 * 109.47248 * 29.72950 * 8 6 4 11 11 H 1.48501 * 109.46761 * 149.72813 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.40800 * 119.99507 * 119.99685 * 12 2 1 15 15 C 1.40218 * 126.07278 * 0.02794 * 14 12 2 16 16 N 1.30860 * 108.36644 * 179.97438 * 15 14 12 17 17 N 1.40080 * 108.35871 * 359.97438 * 16 15 14 18 18 H 0.97001 * 126.06372 * 180.02562 * 17 16 15 19 19 C 1.35709 * 126.06214 * 179.71341 * 14 12 2 20 20 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 21 21 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 22 22 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 23 23 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 24 24 H 1.08998 * 109.47119 * 90.00142 * 13 12 2 25 25 H 1.08997 * 109.47200 * 210.00474 * 13 12 2 26 26 H 1.09002 * 109.46987 * 330.00474 * 13 12 2 27 27 H 1.08000 * 125.81440 * 359.95229 * 15 14 12 28 28 H 1.08002 * 126.22345 * 359.97438 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5780 -1.6375 1.1338 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4780 2.7771 10 1 0.4676 1.9925 1.4430 11 1 0.3894 1.7412 3.8536 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.8277 -0.0063 -2.1230 15 6 3.2427 1.3298 -2.0283 16 7 3.9807 1.6073 -3.0727 17 7 4.0643 0.4595 -3.8714 18 1 4.5491 0.3800 -4.7078 19 6 3.3496 -0.5245 -3.2636 20 1 -0.3633 0.4141 0.9405 21 1 -0.3634 0.6073 -0.8290 22 1 -0.3633 -1.0217 -0.1115 23 1 2.1679 -1.8620 3.4633 24 1 0.7376 -2.1444 -1.9993 25 1 2.4629 -2.5819 -1.9864 26 1 1.5295 -2.5969 -0.4708 27 1 2.9951 2.0133 -1.2297 28 1 3.2197 -1.5344 -3.6235 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261128337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:15 Heat of formation + Delta-G solvation = 63.361660 kcal Electronic energy + Delta-G solvation = -12357.751311 eV Core-core repulsion = 10216.920619 eV Total energy + Delta-G solvation = -2140.830693 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.82410 -37.99264 -34.76349 -32.17682 -32.10039 -29.55547 -26.96448 -26.41325 -22.82848 -22.15813 -20.44402 -19.42886 -18.86046 -16.44418 -15.97616 -15.77034 -15.26631 -15.12512 -14.73415 -14.15136 -13.96476 -13.50441 -13.36615 -13.05809 -12.48761 -12.30305 -11.83548 -11.68116 -11.38547 -11.14997 -10.62727 -10.42101 -10.35067 -8.75326 -7.62304 -6.31409 1.03813 1.52711 1.56729 1.73590 2.09943 2.14025 2.53820 2.82993 3.11363 4.07093 4.16389 4.49773 4.61616 4.73804 4.77278 4.83268 4.89011 4.95831 5.07282 5.18769 5.46398 5.54861 5.98355 6.07653 6.41691 6.61899 6.72515 6.99326 7.10430 7.47985 8.68362 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.012049 C = 0.010817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.331512 B = 2323.257090 C = 2587.964109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.260 3.740 3 H 0.036 0.964 4 C -0.602 4.602 5 H 0.020 0.980 6 C -0.019 4.019 7 N -0.942 5.942 8 Si 1.076 2.924 9 H -0.276 1.276 10 H -0.232 1.232 11 H -0.287 1.287 12 N -0.621 5.621 13 C 0.118 3.882 14 C 0.053 3.947 15 C -0.007 4.007 16 N -0.299 5.299 17 N -0.466 5.466 18 H 0.453 0.547 19 C -0.034 4.034 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.251 0.749 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.177 0.823 28 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 1.819 -13.820 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.156 3.844 3 H 0.054 0.946 4 C -0.641 4.641 5 H 0.038 0.962 6 C -0.216 4.216 7 N -0.578 5.578 8 Si 0.896 3.104 9 H -0.202 1.202 10 H -0.155 1.155 11 H -0.213 1.213 12 N -0.338 5.338 13 C -0.026 4.026 14 C -0.054 4.054 15 C -0.194 4.194 16 N -0.124 5.124 17 N -0.183 5.183 18 H 0.300 0.700 19 C -0.183 4.183 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.194 0.806 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.278 3.783 -13.197 13.732 hybrid contribution 0.358 -2.481 -0.413 2.541 sum 0.079 1.301 -13.611 13.673 Atomic orbital electron populations 1.22374 0.97929 1.00526 1.00064 1.18719 0.90864 0.92466 0.82394 0.94637 1.22543 1.38402 1.09773 0.93356 0.96195 1.27098 0.94098 1.08719 0.91722 1.70936 1.47275 1.07598 1.32025 0.83767 0.77800 0.71188 0.77614 1.20178 1.15529 1.21306 1.45935 1.55330 1.10472 1.22086 1.21266 0.99383 0.81938 0.99989 1.18252 1.00826 0.92724 0.93607 1.23679 1.00749 0.96175 0.98846 1.77006 1.21799 1.08708 1.04931 1.45819 1.43462 1.07123 1.21926 0.69976 1.22024 1.03369 0.96673 0.96246 0.93168 0.93249 0.93756 0.93975 0.93582 0.91532 0.94238 0.80638 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.21 8.57 71.98 0.62 -5.59 15 2 C 0.26 11.90 2.23 44.24 0.10 12.00 15 3 H 0.04 1.62 4.76 -2.39 -0.01 1.61 15 4 C -0.60 -33.52 8.37 25.60 0.21 -33.30 15 5 H 0.02 1.23 7.38 -2.91 -0.02 1.21 15 6 C -0.02 -1.06 5.33 84.66 0.45 -0.61 15 7 N -0.94 -58.75 13.70 21.45 0.29 -58.46 15 8 Si 1.08 48.59 26.17 68.60 1.80 50.38 15 9 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 10 H -0.23 -9.03 5.53 99.48 0.55 -8.48 15 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 15 12 N -0.62 -25.22 2.92 -702.88 -2.05 -27.27 15 13 C 0.12 4.13 9.33 127.77 1.19 5.32 15 14 C 0.05 1.96 6.70 37.59 0.25 2.21 15 15 C -0.01 -0.24 11.19 85.32 0.95 0.71 15 16 N -0.30 -10.06 12.69 -56.78 -0.72 -10.78 15 17 N -0.47 -12.27 7.41 -56.75 -0.42 -12.69 15 18 H 0.45 7.95 8.96 -213.33 -1.91 6.04 15 19 C -0.03 -0.96 11.15 83.47 0.93 -0.03 15 20 H 0.05 2.10 5.06 -2.39 -0.01 2.08 15 21 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.04 1.80 7.47 -2.38 -0.02 1.78 15 23 H 0.25 15.95 8.73 -92.70 -0.81 15.14 15 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 25 H 0.07 1.94 6.87 -2.39 -0.02 1.93 15 26 H 0.04 1.60 6.92 -2.39 -0.02 1.58 15 27 H 0.18 6.33 6.87 -2.91 -0.02 6.31 15 28 H 0.20 4.17 7.25 -2.91 -0.02 4.15 15 Total: -1.00 -67.87 232.06 2.67 -65.19 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.93 Total: 12.90 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.71 Total: -19.28 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -2.90 Total: -109.19 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.80 Total: 50.38 kcal Total: -67.87 2.67 -65.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.554 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds