Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46754 * 2 1 4 4 N 1.35307 * 126.91005 * 264.95149 * 3 2 1 5 5 H 0.97003 * 125.87187 * 0.02562 * 4 3 2 6 6 N 1.28720 * 108.26205 * 180.02562 * 4 3 2 7 7 N 1.28634 * 110.17787 * 359.71888 * 6 4 3 8 8 C 1.33774 * 108.88405 * 0.45667 * 7 6 4 9 9 C 1.50705 * 126.75105 * 179.82380 * 8 7 6 10 10 H 1.08997 * 109.47199 * 179.68189 * 9 8 7 11 11 C 1.53000 * 109.46988 * 59.68447 * 9 8 7 12 12 C 1.50693 * 109.46935 * 299.68354 * 9 8 7 13 13 H 1.08004 * 120.00269 * 34.87597 * 12 9 8 14 14 C 1.37882 * 120.00005 * 214.59256 * 12 9 8 15 15 N 1.31511 * 120.00027 * 183.19252 * 14 12 9 16 16 Si 1.86792 * 119.99824 * 3.19745 * 14 12 9 17 17 H 1.48501 * 109.47689 * 85.06704 * 16 14 12 18 18 H 1.48502 * 109.47136 * 205.06951 * 16 14 12 19 19 H 1.48504 * 109.47310 * 325.06684 * 16 14 12 20 20 H 1.09000 * 109.46752 * 60.00078 * 1 2 3 21 21 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47504 * 300.00163 * 1 2 3 23 23 H 1.08991 * 109.47504 * 239.99837 * 2 1 3 24 24 H 1.09000 * 109.46752 * 119.99922 * 2 1 3 25 25 H 1.08998 * 109.47232 * 298.58203 * 11 9 8 26 26 H 1.08999 * 109.47012 * 58.58134 * 11 9 8 27 27 H 1.08999 * 109.47309 * 178.58257 * 11 9 8 28 28 H 0.97003 * 120.00265 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3929 2.1553 -1.0777 5 1 2.3737 1.8575 -2.0007 6 7 2.7657 3.3171 -0.6677 7 7 2.6653 3.3890 0.6127 8 6 2.2140 2.2188 1.0781 9 6 1.9530 1.8615 2.5187 10 1 1.5850 0.8373 2.5781 11 6 0.9056 2.8141 3.0987 12 6 3.2323 1.9820 3.3058 13 1 3.9485 2.7516 3.0579 14 6 3.4861 1.1136 4.3463 15 7 4.5725 1.2579 5.0732 16 14 2.2867 -0.2679 4.7233 17 1 2.5927 -1.4381 3.8618 18 1 2.4132 -0.6575 6.1507 19 1 0.9005 0.1936 4.4572 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.2839 3.8357 3.0624 26 1 -0.0116 2.7453 2.5137 27 1 0.6983 2.5400 4.1331 28 1 4.7512 0.6467 5.8049 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141760.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = 72.352805 kcal Electronic energy + Delta-G solvation = -12431.211665 eV Core-core repulsion = 10290.770858 eV Total energy + Delta-G solvation = -2140.440808 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.61759 -35.00656 -34.02926 -32.23439 -30.89058 -28.57291 -25.13653 -23.76852 -22.74719 -21.41661 -19.35329 -17.38724 -16.55929 -15.50788 -14.54176 -14.43049 -13.89056 -13.39572 -12.51489 -12.44127 -12.14541 -11.78831 -11.40923 -11.31545 -10.93558 -10.90479 -10.67067 -10.19031 -9.98717 -9.73221 -9.55288 -9.09531 -8.53791 -8.12383 -6.04132 -4.02819 2.17401 3.24328 3.29074 3.35189 3.36381 3.40236 4.41364 4.88931 5.06077 5.23895 5.40612 5.52012 5.67258 5.78687 5.98029 5.98755 6.28275 6.37775 6.48620 6.53996 6.82592 6.98396 7.15619 7.41155 7.48290 7.73585 8.57117 9.07178 9.21408 9.56142 11.09385 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.014449 C = 0.012195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.123991 B = 1937.349409 C = 2295.458646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.044 4.044 4 N -0.402 5.402 5 H 0.436 0.564 6 N -0.106 5.106 7 N -0.255 5.255 8 C 0.047 3.953 9 C 0.086 3.914 10 H 0.044 0.956 11 C -0.133 4.133 12 C -0.500 4.500 13 H 0.080 0.920 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.869 3.131 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.261 1.261 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 -4.834 -10.130 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.177 4.177 4 N -0.123 5.123 5 H 0.280 0.720 6 N -0.085 5.085 7 N -0.122 5.122 8 C -0.091 4.091 9 C 0.065 3.935 10 H 0.062 0.938 11 C -0.191 4.191 12 C -0.538 4.538 13 H 0.098 0.902 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.696 3.304 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.186 1.186 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.862 -3.433 -10.242 13.360 hybrid contribution -0.769 -2.007 -0.108 2.152 sum -8.631 -5.440 -10.349 14.533 Atomic orbital electron populations 1.21787 0.94542 1.01813 1.02463 1.19983 0.95981 0.88862 1.03742 1.21914 1.10397 0.97938 0.87404 1.44847 1.46227 1.11062 1.10119 0.72044 1.78179 1.19590 1.02256 1.08471 1.75018 1.15402 1.22284 0.99542 1.22443 0.99513 0.89367 0.97790 1.17702 0.96503 0.94990 0.84265 0.93761 1.21949 0.96563 1.01076 0.99496 1.20924 1.02479 1.16839 1.13550 0.90209 1.25040 0.95059 0.97338 0.95685 1.69894 1.25955 1.37923 1.19863 0.86979 0.82618 0.83018 0.77755 1.20103 1.21376 1.18601 0.93097 0.92045 0.91671 0.91208 0.88818 0.92709 0.96080 0.93251 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 37.16 0.37 -1.40 15 2 C -0.05 -0.64 6.08 -27.88 -0.17 -0.81 15 3 C -0.04 -0.79 6.56 -82.09 -0.54 -1.33 15 4 N -0.40 -6.39 6.98 33.54 0.23 -6.16 15 5 H 0.44 4.70 8.96 -190.39 -1.71 3.00 15 6 N -0.11 -2.13 13.38 60.35 0.81 -1.32 15 7 N -0.25 -5.96 12.41 33.29 0.41 -5.55 15 8 C 0.05 1.04 5.74 -82.77 -0.47 0.56 15 9 C 0.09 2.05 2.31 -92.92 -0.21 1.83 15 10 H 0.04 1.00 4.35 -51.93 -0.23 0.77 15 11 C -0.13 -2.92 9.16 37.16 0.34 -2.58 15 12 C -0.50 -14.21 8.84 -34.44 -0.30 -14.52 15 13 H 0.08 2.57 8.06 -52.48 -0.42 2.15 15 14 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 15 N -0.90 -27.50 13.96 55.43 0.77 -26.73 15 16 Si 0.87 20.64 26.85 -169.99 -4.56 16.07 15 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 19 H -0.26 -5.81 6.80 56.52 0.38 -5.42 15 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.09 1.43 7.51 -51.93 -0.39 1.04 15 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 27 H 0.05 1.07 7.96 -51.93 -0.41 0.65 15 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 LS Contribution 242.63 15.07 3.66 3.66 Total: -1.00 -32.81 242.63 -4.62 -37.43 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.85 Total: -1.08 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.09 Total: -16.32 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 2.23 Total: -39.75 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.56 Total: 16.07 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.81 -4.62 -37.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141760.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.783 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds