Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46754 * 2 1 4 4 N 1.35307 * 126.91005 * 264.95149 * 3 2 1 5 5 H 0.97003 * 125.87187 * 0.02562 * 4 3 2 6 6 N 1.28720 * 108.26205 * 180.02562 * 4 3 2 7 7 N 1.28634 * 110.17787 * 359.71888 * 6 4 3 8 8 C 1.33774 * 108.88405 * 0.45667 * 7 6 4 9 9 C 1.50705 * 126.75105 * 179.82380 * 8 7 6 10 10 H 1.08997 * 109.47199 * 179.68189 * 9 8 7 11 11 C 1.53000 * 109.46988 * 59.68447 * 9 8 7 12 12 C 1.50693 * 109.46935 * 299.68354 * 9 8 7 13 13 H 1.08004 * 120.00269 * 34.87597 * 12 9 8 14 14 C 1.37882 * 120.00005 * 214.59256 * 12 9 8 15 15 N 1.31511 * 120.00027 * 183.19252 * 14 12 9 16 16 Si 1.86792 * 119.99824 * 3.19745 * 14 12 9 17 17 H 1.48501 * 109.47689 * 85.06704 * 16 14 12 18 18 H 1.48502 * 109.47136 * 205.06951 * 16 14 12 19 19 H 1.48504 * 109.47310 * 325.06684 * 16 14 12 20 20 H 1.09000 * 109.46752 * 60.00078 * 1 2 3 21 21 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47504 * 300.00163 * 1 2 3 23 23 H 1.08991 * 109.47504 * 239.99837 * 2 1 3 24 24 H 1.09000 * 109.46752 * 119.99922 * 2 1 3 25 25 H 1.08998 * 109.47232 * 298.58203 * 11 9 8 26 26 H 1.08999 * 109.47012 * 58.58134 * 11 9 8 27 27 H 1.08999 * 109.47309 * 178.58257 * 11 9 8 28 28 H 0.97003 * 120.00265 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3929 2.1553 -1.0777 5 1 2.3737 1.8575 -2.0007 6 7 2.7657 3.3171 -0.6677 7 7 2.6653 3.3890 0.6127 8 6 2.2140 2.2188 1.0781 9 6 1.9530 1.8615 2.5187 10 1 1.5850 0.8373 2.5781 11 6 0.9056 2.8141 3.0987 12 6 3.2323 1.9820 3.3058 13 1 3.9485 2.7516 3.0579 14 6 3.4861 1.1136 4.3463 15 7 4.5725 1.2579 5.0732 16 14 2.2867 -0.2679 4.7233 17 1 2.5927 -1.4381 3.8618 18 1 2.4132 -0.6575 6.1507 19 1 0.9005 0.1936 4.4572 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.2839 3.8357 3.0624 26 1 -0.0116 2.7453 2.5137 27 1 0.6983 2.5400 4.1331 28 1 4.7512 0.6467 5.8049 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141760.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = 47.773406 kcal Electronic energy + Delta-G solvation = -12432.277508 eV Core-core repulsion = 10290.770858 eV Total energy + Delta-G solvation = -2141.506650 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.13042 -36.73889 -35.35029 -34.13939 -32.57795 -30.00784 -27.19186 -24.94985 -24.44292 -22.88703 -20.97957 -19.20808 -18.32863 -16.99070 -16.37185 -15.83215 -15.30065 -14.83362 -14.39726 -13.98767 -13.56976 -13.18412 -13.04718 -12.77793 -12.52004 -12.47078 -12.03721 -11.82480 -11.74615 -11.50210 -11.21015 -11.02640 -10.66370 -9.68540 -8.22603 -6.28680 0.73297 1.40100 1.44355 1.55571 1.74291 2.04018 2.41394 3.12376 3.67272 3.89939 4.02349 4.27718 4.43275 4.64897 4.75004 4.77103 4.84053 5.01143 5.08828 5.20550 5.24719 5.40182 5.41096 5.65346 5.72924 6.22437 6.39329 6.78286 7.35054 7.66419 8.95356 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.014449 C = 0.012195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.123991 B = 1937.349409 C = 2295.458646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.015 4.015 4 N -0.373 5.373 5 H 0.461 0.539 6 N -0.121 5.121 7 N -0.304 5.304 8 C 0.001 3.999 9 C 0.090 3.910 10 H 0.064 0.936 11 C -0.128 4.128 12 C -0.507 4.507 13 H 0.017 0.983 14 C 0.007 3.993 15 N -0.955 5.955 16 Si 0.942 3.058 17 H -0.252 1.252 18 H -0.290 1.290 19 H -0.231 1.231 20 H 0.063 0.937 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.110 0.890 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 -7.438 -11.810 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.149 4.149 4 N -0.097 5.097 5 H 0.310 0.690 6 N -0.100 5.100 7 N -0.170 5.170 8 C -0.137 4.137 9 C 0.069 3.931 10 H 0.082 0.918 11 C -0.186 4.186 12 C -0.546 4.546 13 H 0.036 0.964 14 C -0.190 4.190 15 N -0.595 5.595 16 Si 0.764 3.236 17 H -0.177 1.177 18 H -0.216 1.216 19 H -0.154 1.154 20 H 0.082 0.918 21 H 0.107 0.893 22 H 0.066 0.934 23 H 0.128 0.872 24 H 0.101 0.899 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.383 -6.015 -11.991 16.964 hybrid contribution 0.086 -1.136 0.312 1.181 sum -10.298 -7.151 -11.679 17.134 Atomic orbital electron populations 1.21789 0.92623 1.03633 1.02301 1.20257 0.97507 0.85920 1.05218 1.22383 1.07330 0.98936 0.86232 1.44820 1.43897 1.09738 1.11285 0.68981 1.78067 1.20593 1.03954 1.07371 1.74957 1.17041 1.23994 1.01052 1.22355 1.02562 0.90499 0.98315 1.17571 0.94272 0.96357 0.84894 0.91800 1.21842 0.97372 0.99413 0.99989 1.21061 1.03534 1.15304 1.14663 0.96434 1.26078 0.97260 1.00560 0.95056 1.70088 1.28843 1.39668 1.20931 0.85820 0.80962 0.79256 0.77610 1.17659 1.21642 1.15409 0.91751 0.89267 0.93441 0.87205 0.89907 0.94892 0.92874 0.93184 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.90 71.98 0.71 -2.02 15 2 C -0.05 -1.14 6.08 29.85 0.18 -0.96 15 3 C -0.01 -0.48 6.56 41.36 0.27 -0.21 15 4 N -0.37 -10.93 6.98 -47.79 -0.33 -11.26 15 5 H 0.46 8.21 8.96 -219.95 -1.97 6.24 15 6 N -0.12 -4.79 13.38 37.02 0.50 -4.29 15 7 N -0.30 -14.46 12.41 -48.60 -0.60 -15.06 15 8 C 0.00 0.07 5.74 41.60 0.24 0.30 15 9 C 0.09 4.21 2.31 -12.29 -0.03 4.18 15 10 H 0.06 2.71 4.35 -2.39 -0.01 2.70 15 11 C -0.13 -5.54 9.16 71.98 0.66 -4.88 15 12 C -0.51 -29.92 8.84 25.60 0.23 -29.69 15 13 H 0.02 1.20 8.06 -2.91 -0.02 1.18 15 14 C 0.01 0.38 5.47 84.66 0.46 0.85 15 15 N -0.96 -60.72 13.96 21.45 0.30 -60.42 15 16 Si 0.94 41.62 26.85 68.60 1.84 43.47 15 17 H -0.25 -10.20 7.11 99.48 0.71 -9.49 15 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 15 19 H -0.23 -9.04 6.80 99.48 0.68 -8.36 15 20 H 0.06 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.09 1.22 8.14 -2.39 -0.02 1.21 15 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.11 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.08 2.17 7.51 -2.39 -0.02 2.15 15 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.05 2.10 7.96 -2.39 -0.02 2.08 15 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 Total: -1.00 -76.02 242.63 3.58 -72.43 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -0.84 Total: 7.56 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 2.72 Total: -32.42 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -0.14 Total: -91.03 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.84 Total: 43.47 kcal Total: -76.02 3.58 -72.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141760.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.206 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds