Wall clock time and date at job start Mon Mar 30 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46747 * 2 1 4 4 N 1.46498 * 109.47173 * 239.99868 * 2 1 3 5 5 C 1.36781 * 120.00196 * 56.89037 * 4 2 1 6 6 H 1.08001 * 119.99812 * 45.24487 * 5 4 2 7 7 C 1.38741 * 120.00141 * 225.24864 * 5 4 2 8 8 N 1.31651 * 120.00035 * 18.95052 * 7 5 4 9 9 Si 1.86803 * 120.00197 * 198.95054 * 7 5 4 10 10 H 1.48505 * 109.46618 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46808 * 119.99489 * 9 7 5 12 12 H 1.48497 * 109.47250 * 239.99905 * 9 7 5 13 13 C 1.40044 * 120.00090 * 236.88868 * 4 2 1 14 14 C 1.40450 * 126.13818 * 359.69560 * 13 4 2 15 15 N 1.30784 * 108.20213 * 179.81464 * 14 13 4 16 16 N 1.40043 * 108.41615 * 0.43761 * 15 14 13 17 17 H 0.97001 * 125.97742 * 179.69112 * 16 15 14 18 18 C 1.35214 * 108.04583 * 359.71973 * 16 15 14 19 19 H 1.09004 * 109.47112 * 54.46214 * 1 2 3 20 20 H 1.08999 * 109.47068 * 174.46118 * 1 2 3 21 21 H 1.09001 * 109.47367 * 294.46056 * 1 2 3 22 22 H 1.08996 * 109.47078 * 119.99412 * 2 1 3 23 23 H 1.08995 * 109.47532 * 65.16974 * 3 2 1 24 24 H 1.08997 * 109.46982 * 185.17739 * 3 2 1 25 25 H 1.08998 * 109.47046 * 305.16880 * 3 2 1 26 26 H 0.96994 * 120.00117 * 180.02562 * 8 7 5 27 27 H 1.08001 * 125.89697 * 359.96043 * 14 13 4 28 28 H 1.07996 * 126.19088 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6364 -0.2616 -2.4375 6 1 1.6504 0.7924 -2.6725 7 6 1.2308 -1.1805 -3.3946 8 7 0.8546 -2.3883 -3.0299 9 14 1.2184 -0.7040 -5.2008 10 1 1.6818 0.6995 -5.3455 11 1 2.1245 -1.6055 -5.9567 12 1 -0.1615 -0.8269 -5.7357 13 6 2.8765 -1.7901 -1.0687 14 6 3.3534 -2.3333 0.1355 15 7 4.1234 -3.3506 -0.1519 16 7 4.1743 -3.4874 -1.5447 17 1 4.6759 -4.1585 -2.0334 18 6 3.4022 -2.5200 -2.0890 19 1 -0.3633 0.5973 -0.8363 20 1 -0.3633 -1.0229 -0.0992 21 1 -0.3634 0.4255 0.9354 22 1 1.8934 -0.5137 0.8900 23 1 1.7542 1.9290 0.9326 24 1 3.1260 1.4440 -0.0927 25 1 1.6030 1.9823 -0.8401 26 1 0.5714 -3.0308 -3.6991 27 1 3.1220 -1.9745 1.1276 28 1 3.2338 -2.3562 -3.1431 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142563.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:08 Heat of formation + Delta-G solvation = 70.002451 kcal Electronic energy + Delta-G solvation = -12682.271991 eV Core-core repulsion = 10541.729264 eV Total energy + Delta-G solvation = -2140.542727 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48266 -38.10002 -34.46892 -32.29830 -31.48734 -28.85027 -27.75470 -26.21054 -22.72244 -21.60566 -20.83755 -19.17714 -17.57345 -16.66716 -15.90419 -15.39800 -15.15706 -14.98315 -14.40566 -14.09421 -13.36624 -13.27981 -13.03158 -12.83093 -12.51013 -12.31133 -12.11790 -11.80848 -11.58687 -11.23010 -10.61959 -10.21441 -10.05152 -8.20259 -7.33158 -5.60215 1.41461 1.42778 1.48768 1.57870 2.36341 2.51234 2.63014 3.25689 3.53588 4.27033 4.45601 4.60365 4.64400 4.73546 4.97471 5.08207 5.16287 5.19257 5.20504 5.55018 5.58578 5.69856 5.71647 5.94051 6.45686 6.92404 7.16054 7.21364 7.84944 8.31252 9.04268 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.019877 C = 0.013028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.262494 B = 1408.309869 C = 2148.760334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 C -0.143 4.143 4 N -0.487 5.487 5 C -0.292 4.292 6 H 0.065 0.935 7 C -0.010 4.010 8 N -0.885 5.885 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.290 1.290 13 C 0.079 3.921 14 C -0.020 4.020 15 N -0.317 5.317 16 N -0.480 5.480 17 H 0.440 0.560 18 C -0.027 4.027 19 H 0.041 0.959 20 H 0.023 0.977 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.254 0.746 27 H 0.188 0.812 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 3.117 3.009 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.038 3.962 3 C -0.201 4.201 4 N -0.192 5.192 5 C -0.422 4.422 6 H 0.083 0.917 7 C -0.211 4.211 8 N -0.523 5.523 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.217 1.217 13 C -0.031 4.031 14 C -0.208 4.208 15 N -0.143 5.143 16 N -0.197 5.197 17 H 0.284 0.716 18 C -0.177 4.177 19 H 0.060 0.940 20 H 0.042 0.958 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.204 0.796 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.838 2.240 3.414 4.973 hybrid contribution -0.644 0.168 -1.882 1.996 sum 2.194 2.408 1.532 3.601 Atomic orbital electron populations 1.21890 0.96455 1.00021 1.00799 1.20918 0.93499 0.93328 0.88468 1.22013 1.00210 0.96320 1.01585 1.41393 1.45289 1.29224 1.03320 1.19051 1.41434 0.92756 0.88938 0.91716 1.25941 0.96477 0.96427 1.02294 1.70327 1.41878 1.06401 1.33700 0.85527 0.77120 0.78548 0.81154 1.19073 1.20995 1.21699 1.18009 0.97477 0.95766 0.91806 1.23632 1.01382 0.96969 0.98804 1.76711 1.24211 1.20590 0.92779 1.45458 1.41916 1.28241 1.04066 0.71634 1.21383 1.02429 0.95609 0.98294 0.94022 0.95756 0.90776 0.91184 0.90373 0.93855 0.93832 0.93683 0.79554 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.02 71.98 0.65 -4.49 15 2 C 0.14 5.64 3.28 44.99 0.15 5.79 15 3 C -0.14 -4.81 9.12 71.98 0.66 -4.16 15 4 N -0.49 -23.53 2.54 -490.34 -1.25 -24.78 15 5 C -0.29 -15.03 7.89 84.04 0.66 -14.37 15 6 H 0.07 3.33 7.20 -2.91 -0.02 3.31 15 7 C -0.01 -0.51 3.49 84.84 0.30 -0.21 15 8 N -0.88 -48.91 11.41 21.64 0.25 -48.66 15 9 Si 0.95 41.68 29.59 68.60 2.03 43.71 15 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 12 H -0.29 -12.84 7.11 99.48 0.71 -12.14 15 13 C 0.08 3.86 6.06 37.85 0.23 4.09 15 14 C -0.02 -0.87 11.19 85.39 0.96 0.09 15 15 N -0.32 -13.63 12.68 -56.66 -0.72 -14.35 15 16 N -0.48 -19.96 7.36 -57.01 -0.42 -20.38 15 17 H 0.44 14.72 8.96 -213.36 -1.91 12.81 15 18 C -0.03 -1.28 9.70 83.66 0.81 -0.47 15 19 H 0.04 1.70 7.79 -2.38 -0.02 1.68 15 20 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.07 2.55 6.13 -2.39 -0.01 2.53 15 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.04 1.55 7.40 -2.39 -0.02 1.53 15 26 H 0.25 13.61 8.31 -92.71 -0.77 12.84 15 27 H 0.19 6.82 6.88 -2.91 -0.02 6.80 15 28 H 0.15 7.37 6.19 -2.91 -0.02 7.35 15 Total: -1.00 -60.51 236.08 3.55 -56.96 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.75 Total: 21.26 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.41 Total: -13.74 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -2.14 Total: -108.18 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -60.51 3.55 -56.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142563.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.958 kcal (2) G-P(sol) polarization free energy of solvation -60.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds