Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99442 * 2 1 4 4 H 1.48497 * 109.47372 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.47319 * 30.00280 * 3 2 1 6 6 H 1.48504 * 109.46945 * 150.00171 * 3 2 1 7 7 C 1.37873 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99698 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00469 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.31171 * 7.50326 * 9 7 2 11 11 C 1.54741 * 110.44652 * 129.77137 * 9 7 2 12 12 C 1.54986 * 102.93914 * 140.81277 * 11 9 7 13 13 N 1.48670 * 103.31737 * 322.93078 * 12 11 9 14 14 C 1.47284 * 105.68478 * 38.61871 * 13 12 11 15 15 C 1.53698 * 110.43032 * 214.58063 * 14 13 12 16 16 C 1.55023 * 104.05857 * 216.18764 * 15 14 13 17 17 C 1.54945 * 102.82315 * 37.44052 * 16 15 14 18 18 C 1.53313 * 110.63917 * 96.06808 * 14 13 12 19 19 H 0.96997 * 120.00338 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.71922 * 259.17256 * 11 9 7 21 21 H 1.09000 * 110.72101 * 22.27199 * 11 9 7 22 22 H 1.09003 * 110.64954 * 204.46645 * 12 11 9 23 23 H 1.09005 * 110.64704 * 81.38910 * 12 11 9 24 24 H 1.00903 * 110.99627 * 278.18662 * 13 12 11 25 25 H 1.08996 * 110.51398 * 334.82675 * 15 14 13 26 26 H 1.08991 * 110.51749 * 97.54551 * 15 14 13 27 27 H 1.08998 * 110.74426 * 279.11053 * 16 15 14 28 28 H 1.08997 * 110.74248 * 155.77183 * 16 15 14 29 29 H 1.09000 * 110.48771 * 203.68853 * 17 16 15 30 30 H 1.09004 * 110.48373 * 81.05254 * 17 16 15 31 31 H 1.08996 * 110.07819 * 239.50550 * 18 14 13 32 32 H 1.09008 * 110.07247 * 1.04636 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.1842 -2.3202 -0.1336 11 6 1.7838 -3.4308 -1.1154 12 6 1.7639 -4.8260 -0.4407 13 7 2.1632 -4.5341 0.9613 14 6 1.5054 -3.2622 1.3061 15 6 2.3978 -2.4336 2.2439 16 6 1.3958 -1.7429 3.2042 17 6 0.3202 -2.8364 3.4236 18 6 0.1867 -3.5187 2.0448 19 1 -0.4850 0.8400 0.0004 20 1 1.1230 -3.4121 -1.9820 21 1 2.7983 -3.1513 -1.3996 22 1 2.4843 -5.4925 -0.9148 23 1 0.7623 -5.2547 -0.4738 24 1 3.1660 -4.4564 1.0430 25 1 3.0740 -3.0828 2.8000 26 1 2.9594 -1.6900 1.6786 27 1 0.9592 -0.8602 2.7369 28 1 1.8799 -1.4831 4.1456 29 1 -0.6271 -2.3857 3.7195 30 1 0.6531 -3.5538 4.1737 31 1 -0.6439 -3.0822 1.4902 32 1 0.0309 -4.5902 2.1712 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = -10.134122 kcal Electronic energy + Delta-G solvation = -13263.827927 eV Core-core repulsion = 11223.350562 eV Total energy + Delta-G solvation = -2040.477366 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93957 -34.46414 -32.73878 -29.03243 -28.17578 -27.53798 -24.45207 -22.29519 -20.52974 -19.28985 -17.94888 -16.07955 -15.39592 -14.91500 -14.11584 -13.64047 -13.43937 -12.64903 -12.23493 -11.99785 -11.68165 -11.26739 -10.93883 -10.55906 -10.39666 -10.23129 -10.19828 -10.05806 -9.88643 -9.52629 -9.19389 -9.07164 -8.71175 -8.48637 -7.67194 -6.03281 -4.00726 3.26944 3.34963 3.37002 4.40091 5.15147 5.25643 5.58531 5.73108 5.87649 5.93673 6.15629 6.27805 6.43081 6.51088 6.56864 6.58393 6.71478 6.77790 6.83795 6.89971 7.03169 7.13033 7.25221 7.32869 7.40537 7.56341 7.74426 7.86215 8.07279 8.20474 8.50219 9.03409 9.55599 11.05482 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.016696 C = 0.013527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.330259 B = 1676.694209 C = 2069.498547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.053 0.947 9 C 0.019 3.981 10 H 0.072 0.928 11 C -0.152 4.152 12 C 0.038 3.962 13 N -0.673 5.673 14 C 0.098 3.902 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.098 4.098 19 H 0.260 0.740 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.325 0.675 25 H 0.035 0.965 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -4.527 2.657 5.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.071 0.929 9 C -0.001 4.001 10 H 0.091 0.909 11 C -0.192 4.192 12 C -0.092 4.092 13 N -0.300 5.300 14 C 0.008 3.992 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.136 4.136 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.053 0.947 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.578 -4.868 3.007 5.935 hybrid contribution 0.931 1.614 -0.575 1.951 sum 2.509 -3.254 2.431 4.774 Atomic orbital electron populations 1.69894 1.05802 1.26459 1.50514 1.24914 0.94792 0.98815 0.94870 0.86764 0.80095 0.84098 0.78131 1.20771 1.21195 1.19810 1.20875 0.92309 0.90342 1.49851 0.92894 1.20165 0.99751 0.92225 0.87953 0.90939 1.23305 1.00484 0.95486 0.99910 1.23058 0.99861 0.96991 0.89242 1.62933 1.12264 1.33377 1.21402 1.22132 0.92859 0.86689 0.97566 1.22713 0.97434 0.98956 0.96506 1.22347 0.96441 0.98825 0.97493 1.22299 0.98454 0.97592 0.97201 1.22077 0.97546 0.98835 0.95130 0.92955 0.93294 0.92967 0.92914 0.91665 0.86046 0.94678 0.88171 0.90371 0.93957 0.93161 0.93301 0.92004 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 12.65 55.43 0.70 -24.15 16 2 C 0.07 1.81 5.42 -17.82 -0.10 1.72 16 3 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -12.85 5.79 -34.44 -0.20 -13.05 16 8 H 0.05 1.38 6.97 -52.49 -0.37 1.01 16 9 C 0.02 0.46 2.90 -90.63 -0.26 0.20 16 10 H 0.07 1.98 5.98 -51.93 -0.31 1.67 16 11 C -0.15 -3.26 6.61 -24.77 -0.16 -3.42 16 12 C 0.04 0.71 7.56 -1.79 -0.01 0.70 16 13 N -0.67 -13.07 6.91 -96.50 -0.67 -13.74 16 14 C 0.10 2.11 1.03 -130.64 -0.13 1.98 16 15 C -0.12 -2.49 5.31 -25.30 -0.13 -2.63 16 16 C -0.11 -2.32 6.91 -24.64 -0.17 -2.49 16 17 C -0.12 -2.25 6.84 -24.96 -0.17 -2.43 16 18 C -0.10 -2.03 6.28 -25.83 -0.16 -2.20 16 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 20 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.05 1.12 7.86 -51.93 -0.41 0.71 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.32 5.98 8.31 -39.29 -0.33 5.65 16 25 H 0.03 0.68 7.90 -51.93 -0.41 0.27 16 26 H 0.10 2.31 4.93 -51.93 -0.26 2.05 16 27 H 0.08 1.82 8.10 -51.93 -0.42 1.40 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.39 7.10 -51.93 -0.37 1.02 16 32 H 0.05 1.05 7.94 -51.92 -0.41 0.64 16 LS Contribution 247.32 15.07 3.73 3.73 Total: -1.00 -26.66 247.32 -7.72 -34.38 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.95 Total: 5.69 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.51 Total: -21.62 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.03 Total: -37.89 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.66 -7.72 -34.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.248 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds