Wall clock time and date at job start Mon Mar 30 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99442 * 2 1 4 4 H 1.48497 * 109.47372 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.47319 * 30.00280 * 3 2 1 6 6 H 1.48504 * 109.46945 * 150.00171 * 3 2 1 7 7 C 1.37873 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99698 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00469 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.31171 * 7.50326 * 9 7 2 11 11 C 1.54741 * 110.44652 * 129.77137 * 9 7 2 12 12 C 1.54986 * 102.93914 * 140.81277 * 11 9 7 13 13 N 1.48670 * 103.31737 * 322.93078 * 12 11 9 14 14 C 1.47284 * 105.68478 * 38.61871 * 13 12 11 15 15 C 1.53698 * 110.43032 * 214.58063 * 14 13 12 16 16 C 1.55023 * 104.05857 * 216.18764 * 15 14 13 17 17 C 1.54945 * 102.82315 * 37.44052 * 16 15 14 18 18 C 1.53313 * 110.63917 * 96.06808 * 14 13 12 19 19 H 0.96997 * 120.00338 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.71922 * 259.17256 * 11 9 7 21 21 H 1.09000 * 110.72101 * 22.27199 * 11 9 7 22 22 H 1.09003 * 110.64954 * 204.46645 * 12 11 9 23 23 H 1.09005 * 110.64704 * 81.38910 * 12 11 9 24 24 H 1.00903 * 110.99627 * 278.18662 * 13 12 11 25 25 H 1.08996 * 110.51398 * 334.82675 * 15 14 13 26 26 H 1.08991 * 110.51749 * 97.54551 * 15 14 13 27 27 H 1.08998 * 110.74426 * 279.11053 * 16 15 14 28 28 H 1.08997 * 110.74248 * 155.77183 * 16 15 14 29 29 H 1.09000 * 110.48771 * 203.68853 * 17 16 15 30 30 H 1.09004 * 110.48373 * 81.05254 * 17 16 15 31 31 H 1.08996 * 110.07819 * 239.50550 * 18 14 13 32 32 H 1.09008 * 110.07247 * 1.04636 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.1842 -2.3202 -0.1336 11 6 1.7838 -3.4308 -1.1154 12 6 1.7639 -4.8260 -0.4407 13 7 2.1632 -4.5341 0.9613 14 6 1.5054 -3.2622 1.3061 15 6 2.3978 -2.4336 2.2439 16 6 1.3958 -1.7429 3.2042 17 6 0.3202 -2.8364 3.4236 18 6 0.1867 -3.5187 2.0448 19 1 -0.4850 0.8400 0.0004 20 1 1.1230 -3.4121 -1.9820 21 1 2.7983 -3.1513 -1.3996 22 1 2.4843 -5.4925 -0.9148 23 1 0.7623 -5.2547 -0.4738 24 1 3.1660 -4.4564 1.0430 25 1 3.0740 -3.0828 2.8000 26 1 2.9594 -1.6900 1.6786 27 1 0.9592 -0.8602 2.7369 28 1 1.8799 -1.4831 4.1456 29 1 -0.6271 -2.3857 3.7195 30 1 0.6531 -3.5538 4.1737 31 1 -0.6439 -3.0822 1.4902 32 1 0.0309 -4.5902 2.1712 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:02 Heat of formation + Delta-G solvation = -26.372715 kcal Electronic energy + Delta-G solvation = -13264.532086 eV Core-core repulsion = 11223.350562 eV Total energy + Delta-G solvation = -2041.181524 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63771 -36.08807 -34.73006 -30.86579 -29.83610 -29.20214 -26.36178 -23.98468 -22.20967 -20.97169 -19.71605 -18.06882 -17.02043 -16.73758 -15.92997 -15.30932 -15.00226 -14.51777 -13.92175 -13.67230 -13.50345 -13.04215 -12.82027 -12.40575 -12.17924 -11.86836 -11.80270 -11.68657 -11.55312 -11.22068 -11.02802 -10.86954 -10.62085 -10.47825 -9.31773 -8.07418 -6.08520 1.38322 1.41435 1.48954 2.43495 3.20589 3.58203 3.94902 4.08925 4.29567 4.38922 4.51674 4.69958 4.81169 4.86574 4.89741 4.99345 5.05791 5.10927 5.21245 5.28735 5.34106 5.47606 5.51482 5.59220 5.67672 5.72519 5.82506 5.92700 6.34025 6.39536 6.76440 7.02010 7.49293 9.01389 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.016696 C = 0.013527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.330259 B = 1676.694209 C = 2069.498547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.051 0.949 9 C 0.010 3.990 10 H 0.032 0.968 11 C -0.152 4.152 12 C 0.048 3.952 13 N -0.665 5.665 14 C 0.100 3.900 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.097 4.097 19 H 0.258 0.742 20 H 0.043 0.957 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.334 0.666 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -5.632 3.534 7.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.069 0.931 9 C -0.010 4.010 10 H 0.050 0.950 11 C -0.191 4.191 12 C -0.082 4.082 13 N -0.292 5.292 14 C 0.009 3.991 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.135 4.135 19 H 0.067 0.933 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.085 0.915 24 H 0.150 0.850 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.932 -5.983 3.881 7.711 hybrid contribution 0.521 1.918 -0.881 2.174 sum 3.453 -4.065 3.000 6.120 Atomic orbital electron populations 1.70030 1.07131 1.26777 1.52328 1.25529 0.95362 1.01665 0.95139 0.85900 0.79217 0.80708 0.77995 1.20672 1.21394 1.18880 1.21095 0.92202 0.91291 1.48567 0.93106 1.20148 0.97192 0.92848 0.90832 0.94966 1.23232 0.99930 0.96902 0.99042 1.23051 1.01068 0.95616 0.88462 1.62900 1.12845 1.31680 1.21794 1.21977 0.93562 0.87315 0.96231 1.22624 0.97520 0.98704 0.96492 1.22297 0.96802 0.97774 0.98245 1.22278 0.98355 0.97491 0.96735 1.22022 0.96200 0.99479 0.95794 0.93329 0.93854 0.93082 0.89634 0.91512 0.85050 0.92256 0.90420 0.94132 0.91325 0.92818 0.90578 0.94974 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.28 12.65 21.45 0.27 -53.01 16 2 C 0.02 1.16 5.42 84.65 0.46 1.62 16 3 Si 0.94 43.00 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.49 -25.81 5.79 25.60 0.15 -25.66 16 8 H 0.05 2.64 6.97 -2.91 -0.02 2.62 16 9 C 0.01 0.49 2.90 -10.80 -0.03 0.46 16 10 H 0.03 1.82 5.98 -2.39 -0.01 1.81 16 11 C -0.15 -6.37 6.61 31.87 0.21 -6.16 16 12 C 0.05 1.65 7.56 86.64 0.65 2.31 16 13 N -0.67 -24.01 6.91 -459.23 -3.17 -27.18 16 14 C 0.10 4.19 1.03 3.94 0.00 4.19 16 15 C -0.12 -4.67 5.31 31.52 0.17 -4.51 16 16 C -0.11 -4.48 6.91 31.95 0.22 -4.26 16 17 C -0.11 -4.04 6.84 31.74 0.22 -3.82 16 18 C -0.10 -3.94 6.28 31.18 0.20 -3.74 16 19 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 20 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.05 2.13 7.86 -2.39 -0.02 2.11 16 22 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 24 H 0.33 11.16 8.31 -89.69 -0.75 10.42 16 25 H 0.06 2.10 7.90 -2.39 -0.02 2.08 16 26 H 0.08 3.50 4.93 -2.39 -0.01 3.49 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.03 1.47 7.10 -2.39 -0.02 1.45 16 32 H 0.06 2.47 7.94 -2.38 -0.02 2.45 16 Total: -1.00 -57.05 247.32 1.72 -55.34 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.35 Total: 19.40 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 2.25 Total: -39.57 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.90 Total: -80.19 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -57.05 1.72 -55.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.963 kcal (2) G-P(sol) polarization free energy of solvation -57.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds