Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 C 1.50701 * 109.47060 * 240.00379 * 2 1 3 5 5 H 1.08003 * 120.00042 * 239.99617 * 4 2 1 6 6 C 1.37870 * 120.00255 * 59.99602 * 4 2 1 7 7 N 1.31514 * 120.00168 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00131 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46812 * 60.00479 * 8 6 4 10 10 H 1.48502 * 109.46958 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47063 * 300.00401 * 8 6 4 12 12 N 1.46493 * 109.47422 * 120.00323 * 2 1 3 13 13 C 1.35975 * 126.07100 * 285.00182 * 12 2 1 14 14 C 1.35701 * 107.55546 * 179.73571 * 13 12 2 15 15 N 1.40793 * 126.07076 * 180.02562 * 14 13 12 16 16 C 1.40223 * 107.86344 * 359.97438 * 14 13 12 17 17 N 1.30859 * 108.36578 * 359.97438 * 16 14 13 18 18 H 1.09000 * 109.46711 * 299.99470 * 1 2 3 19 19 H 1.08994 * 109.47425 * 59.99929 * 1 2 3 20 20 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47024 * 180.02562 * 3 2 1 22 22 H 1.08994 * 109.46975 * 300.00346 * 3 2 1 23 23 H 1.09005 * 109.46741 * 59.99881 * 3 2 1 24 24 H 0.96993 * 120.00357 * 179.97438 * 7 6 4 25 25 H 1.08002 * 126.21989 * 359.69787 * 13 12 2 26 26 H 0.97005 * 120.00045 * 359.97438 * 15 14 13 27 27 H 0.96994 * 120.00487 * 180.02562 * 15 14 13 28 28 H 1.07998 * 125.81945 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 2.0171 -0.1961 2.4627 14 6 2.5458 -1.1469 3.2738 15 7 2.7269 -1.0416 4.6661 16 6 2.8787 -2.2534 2.4794 17 7 2.5627 -1.9806 1.2392 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 0.7094 1.1618 -3.4843 25 1 1.6606 0.7767 2.7676 26 1 2.4634 -0.2312 5.1295 27 1 3.1158 -1.7791 5.1618 28 1 3.3198 -3.1743 2.8313 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157805.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = 59.320932 kcal Electronic energy + Delta-G solvation = -12442.349334 eV Core-core repulsion = 10301.343423 eV Total energy + Delta-G solvation = -2141.005912 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70898 -37.44261 -34.71911 -33.46851 -30.59817 -28.56566 -27.78175 -27.11772 -23.40708 -21.41961 -20.73838 -18.40378 -17.52229 -16.64576 -16.37411 -15.62020 -15.56959 -15.07699 -14.55601 -13.70723 -13.46339 -13.20082 -13.01355 -12.75291 -12.56035 -12.50752 -12.10610 -12.01674 -11.52630 -11.25831 -10.76109 -10.50318 -9.98649 -8.15189 -7.82505 -6.26720 1.36714 1.43182 1.44152 1.52199 2.07552 2.29042 2.44040 3.12074 3.46814 4.16586 4.33621 4.51407 4.69482 4.79519 4.83637 4.92738 5.04610 5.18889 5.40939 5.54422 5.73548 5.85274 5.95943 6.21158 6.51465 6.83993 6.98573 7.24200 7.42468 7.47855 8.87681 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.056381 B = 0.011317 C = 0.010105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.499705 B = 2473.594897 C = 2770.196152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.296 3.704 3 C -0.130 4.130 4 C -0.531 4.531 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.903 5.903 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.278 1.278 12 N -0.341 5.341 13 C -0.051 4.051 14 C 0.042 3.958 15 N -0.867 5.867 16 C -0.031 4.031 17 N -0.309 5.309 18 H 0.038 0.962 19 H 0.087 0.913 20 H 0.018 0.982 21 H 0.024 0.976 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.267 0.733 25 H 0.176 0.824 26 H 0.400 0.600 27 H 0.403 0.597 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -0.204 9.483 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.215 3.785 3 C -0.189 4.189 4 C -0.569 4.569 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.542 5.542 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.204 1.204 12 N -0.128 5.128 13 C -0.200 4.200 14 C -0.068 4.068 15 N -0.417 5.417 16 C -0.217 4.217 17 N -0.133 5.133 18 H 0.057 0.943 19 H 0.106 0.894 20 H 0.037 0.963 21 H 0.043 0.957 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.193 0.807 26 H 0.229 0.771 27 H 0.232 0.768 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.166 -0.451 7.910 8.009 hybrid contribution 0.295 -0.094 0.288 0.423 sum 1.461 -0.546 8.199 8.346 Atomic orbital electron populations 1.22003 0.96129 0.99264 1.01593 1.18507 0.91274 0.89358 0.79393 1.21965 0.98716 0.96140 1.02060 1.21274 1.32372 1.12830 0.90443 0.92646 1.25430 0.94999 0.95702 1.00991 1.69825 1.36771 1.23087 1.24498 0.85593 0.78493 0.78595 0.78787 1.20459 1.19981 1.20361 1.49168 1.46266 1.10435 1.06967 1.22047 1.11066 1.01541 0.85310 1.17765 1.07144 0.94501 0.87345 1.41276 1.76788 1.22059 1.01587 1.23936 1.06746 1.00803 0.90212 1.77178 1.16822 0.98374 1.20961 0.94312 0.89438 0.96262 0.95653 0.89373 0.93620 0.92305 0.80681 0.77117 0.76762 0.78640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.51 71.98 0.61 -5.70 15 2 C 0.30 14.86 0.96 2.86 0.00 14.87 15 3 C -0.13 -6.05 8.07 71.98 0.58 -5.47 15 4 C -0.53 -29.78 7.98 25.60 0.20 -29.58 15 5 H 0.06 3.31 6.93 -2.91 -0.02 3.29 15 6 C 0.03 1.55 5.15 84.65 0.44 1.99 15 7 N -0.90 -48.03 9.35 21.44 0.20 -47.83 15 8 Si 0.96 43.89 29.54 68.60 2.03 45.92 15 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 12 N -0.34 -16.04 3.45 -310.12 -1.07 -17.11 15 13 C -0.05 -1.97 10.68 83.46 0.89 -1.08 15 14 C 0.04 1.44 7.26 37.59 0.27 1.71 15 15 N -0.87 -20.58 9.20 -51.74 -0.48 -21.05 15 16 C -0.03 -1.16 12.03 85.32 1.03 -0.14 15 17 N -0.31 -14.73 11.20 -56.78 -0.64 -15.36 15 18 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 19 H 0.09 4.45 6.07 -2.39 -0.01 4.44 15 20 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 21 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 22 H 0.09 4.39 6.07 -2.39 -0.01 4.37 15 23 H 0.04 1.81 7.39 -2.38 -0.02 1.80 15 24 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 25 H 0.18 5.80 7.58 -2.91 -0.02 5.78 15 26 H 0.40 7.83 8.96 -92.70 -0.83 7.00 15 27 H 0.40 7.59 8.96 -92.71 -0.83 6.76 15 28 H 0.20 5.79 8.06 -2.91 -0.02 5.76 15 Total: -1.00 -62.16 237.44 3.59 -58.57 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.48 Total: 20.28 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.03 Total: -23.40 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -1.98 Total: -101.37 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.16 3.59 -58.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157805.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.889 kcal (2) G-P(sol) polarization free energy of solvation -62.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds