Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00442 * 2 1 4 4 H 1.48503 * 109.47428 * 274.85991 * 3 2 1 5 5 H 1.48512 * 109.46744 * 34.85558 * 3 2 1 6 6 H 1.48496 * 109.47220 * 154.85321 * 3 2 1 7 7 C 1.37879 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99828 * 355.22473 * 7 2 1 9 9 C 1.50702 * 119.99827 * 175.21982 * 7 2 1 10 10 N 1.46902 * 110.01599 * 65.41208 * 9 7 2 11 11 C 1.46908 * 110.99866 * 64.21489 * 10 9 7 12 12 C 1.53003 * 117.49626 * 200.22583 * 11 10 9 13 13 C 1.53008 * 60.02945 * 252.52394 * 12 11 10 14 14 C 1.54267 * 110.02991 * 186.80123 * 9 7 2 15 15 C 1.54962 * 104.16160 * 95.75565 * 14 9 7 16 16 C 1.54888 * 102.77258 * 37.88885 * 15 14 9 17 17 C 1.53874 * 110.03621 * 304.02039 * 9 7 2 18 18 H 0.97007 * 119.99766 * 359.97438 * 1 2 3 19 19 H 1.00899 * 110.99853 * 188.16578 * 10 9 7 20 20 H 1.09000 * 115.56491 * 345.91557 * 11 10 9 21 21 H 1.09002 * 117.49746 * 145.02416 * 12 11 10 22 22 H 1.08997 * 117.49840 * 0.02562 * 12 11 10 23 23 H 1.08997 * 117.49812 * 107.48453 * 13 12 11 24 24 H 1.09001 * 117.49514 * 252.47269 * 13 12 11 25 25 H 1.09003 * 110.48555 * 214.40384 * 14 9 7 26 26 H 1.09006 * 110.48574 * 337.04624 * 14 9 7 27 27 H 1.08998 * 110.72234 * 279.57467 * 15 14 9 28 28 H 1.09001 * 110.76758 * 156.21817 * 15 14 9 29 29 H 1.09003 * 110.48585 * 203.40295 * 16 15 14 30 30 H 1.09004 * 110.49018 * 80.76380 * 16 15 14 31 31 H 1.08999 * 110.02799 * 359.95107 * 17 9 7 32 32 H 1.08993 * 110.02965 * 121.33469 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3941 2.1057 -1.3950 5 1 1.5017 2.6209 0.8002 6 1 3.5943 1.4126 0.5949 7 6 2.0045 -1.1941 -0.0005 8 1 1.4672 -2.1278 0.0769 9 6 3.5076 -1.1963 -0.1093 10 7 4.0988 -0.5715 1.0815 11 6 3.8036 -1.3550 2.2886 12 6 3.9159 -0.6428 3.6381 13 6 4.9701 -1.6730 3.2274 14 6 4.0244 -2.6421 -0.2592 15 6 4.1855 -2.8305 -1.7888 16 6 4.7144 -1.4497 -2.2500 17 6 3.9457 -0.4384 -1.3747 18 1 -0.4850 0.8401 0.0004 19 1 5.0932 -0.4444 0.9672 20 1 3.0240 -2.1092 2.1809 21 1 3.2102 -0.9284 4.4182 22 1 4.2084 0.4071 3.6302 23 1 5.9560 -1.3007 2.9492 24 1 4.9581 -2.6361 3.7377 25 1 4.9851 -2.7578 0.2426 26 1 3.2974 -3.3502 0.1387 27 1 3.2246 -3.0510 -2.2536 28 1 4.9106 -3.6144 -2.0074 29 1 4.4910 -1.2885 -3.3047 30 1 5.7867 -1.3722 -2.0701 31 1 3.0711 -0.0697 -1.9106 32 1 4.5963 0.3935 -1.1051 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = 27.615713 kcal Electronic energy + Delta-G solvation = -13085.356545 eV Core-core repulsion = 11046.516136 eV Total energy + Delta-G solvation = -2038.840410 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.43199 -36.03724 -32.39176 -31.04767 -28.00661 -26.70023 -23.66116 -21.75607 -20.75623 -19.63659 -18.78938 -16.48664 -15.29819 -14.91599 -14.37099 -14.12877 -13.36244 -12.83812 -12.45674 -11.99009 -11.86641 -11.49573 -11.00217 -10.85339 -10.66952 -10.41466 -10.20351 -9.95716 -9.78797 -9.67326 -9.54686 -9.31575 -8.89973 -8.44777 -6.89512 -5.95942 -4.01406 3.50910 3.62712 3.90664 4.55501 4.71750 4.96722 5.34305 5.52880 5.60139 5.60294 5.66049 5.70025 6.04970 6.11451 6.18184 6.31981 6.39872 6.47179 6.49081 6.54849 6.61854 6.67481 6.68203 6.88354 6.99333 7.02829 7.26523 7.78305 8.11161 8.45675 8.71177 9.04356 9.71435 11.14373 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.022003 C = 0.014647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.587070 B = 1272.259349 C = 1911.231551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.085 3.915 3 Si 0.869 3.131 4 H -0.299 1.299 5 H -0.309 1.309 6 H -0.202 1.202 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.210 3.790 10 N -0.644 5.644 11 C 0.070 3.930 12 C -0.186 4.186 13 C -0.229 4.229 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.125 4.125 18 H 0.261 0.739 19 H 0.310 0.690 20 H 0.116 0.884 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 -2.383 0.809 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.118 4.118 3 Si 0.698 3.302 4 H -0.227 1.227 5 H -0.237 1.237 6 H -0.124 1.124 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.121 3.879 10 N -0.272 5.272 11 C -0.042 4.042 12 C -0.224 4.224 13 C -0.269 4.269 14 C -0.172 4.172 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.163 4.163 18 H 0.070 0.930 19 H 0.129 0.871 20 H 0.134 0.866 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.204 -1.830 0.886 9.426 hybrid contribution 0.783 0.244 -0.023 0.820 sum 9.987 -1.586 0.863 10.149 Atomic orbital electron populations 1.69962 1.06906 1.27094 1.49980 1.24962 0.94370 0.99845 0.92664 0.87239 0.84505 0.81699 0.76786 1.22679 1.23673 1.12351 1.20736 0.87343 0.94163 1.51731 0.91363 1.19654 0.95401 0.87420 0.85407 1.61302 1.14542 1.48651 1.02729 1.22210 0.97402 0.97576 0.86982 1.22992 1.01709 0.97414 1.00306 1.23449 0.95031 1.00030 1.08369 1.23000 0.98764 1.00354 0.95108 1.22356 1.00192 0.95863 0.96971 1.22307 0.98457 0.96115 0.98903 1.22582 0.99323 0.97234 0.97210 0.92985 0.87132 0.86638 0.89672 0.89462 0.89908 0.89946 0.93915 0.92199 0.91367 0.93471 0.92764 0.93053 0.90894 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 2 C 0.08 2.44 5.23 -17.82 -0.09 2.35 16 3 Si 0.87 22.05 23.99 -169.99 -4.08 17.97 16 4 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.31 -8.18 7.11 56.52 0.40 -7.78 16 6 H -0.20 -4.74 4.96 56.52 0.28 -4.46 16 7 C -0.50 -13.60 7.52 -34.44 -0.26 -13.86 16 8 H 0.07 2.04 7.73 -52.48 -0.41 1.63 16 9 C 0.21 4.62 0.37 -131.63 -0.05 4.57 16 10 N -0.64 -13.37 3.24 -93.03 -0.30 -13.67 16 11 C 0.07 1.36 5.00 -67.67 -0.34 1.02 16 12 C -0.19 -3.27 10.46 -26.73 -0.28 -3.55 16 13 C -0.23 -3.66 10.23 -26.69 -0.27 -3.93 16 14 C -0.13 -2.58 4.97 -25.03 -0.12 -2.70 16 15 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 16 C -0.12 -2.09 6.83 -25.07 -0.17 -2.26 16 17 C -0.13 -2.62 4.14 -25.61 -0.11 -2.73 16 18 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 19 H 0.31 5.82 8.34 -39.29 -0.33 5.50 16 20 H 0.12 2.49 7.10 -51.93 -0.37 2.13 16 21 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 22 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 23 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.76 7.92 -51.93 -0.41 0.35 16 26 H 0.06 1.22 7.63 -51.93 -0.40 0.83 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.71 6.10 -51.93 -0.32 1.39 16 32 H 0.05 0.99 6.90 -51.93 -0.36 0.64 16 LS Contribution 247.09 15.07 3.72 3.72 Total: -1.00 -29.33 247.09 -6.96 -36.29 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.22 Total: 6.05 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.86 Total: -23.30 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.47 Total: -40.74 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.08 Total: 17.97 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.33 -6.96 -36.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.907 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds