Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00442 * 2 1 4 4 H 1.48503 * 109.47428 * 274.85991 * 3 2 1 5 5 H 1.48512 * 109.46744 * 34.85558 * 3 2 1 6 6 H 1.48496 * 109.47220 * 154.85321 * 3 2 1 7 7 C 1.37879 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99828 * 355.22473 * 7 2 1 9 9 C 1.50702 * 119.99827 * 175.21982 * 7 2 1 10 10 N 1.46902 * 110.01599 * 65.41208 * 9 7 2 11 11 C 1.46908 * 110.99866 * 64.21489 * 10 9 7 12 12 C 1.53003 * 117.49626 * 200.22583 * 11 10 9 13 13 C 1.53008 * 60.02945 * 252.52394 * 12 11 10 14 14 C 1.54267 * 110.02991 * 186.80123 * 9 7 2 15 15 C 1.54962 * 104.16160 * 95.75565 * 14 9 7 16 16 C 1.54888 * 102.77258 * 37.88885 * 15 14 9 17 17 C 1.53874 * 110.03621 * 304.02039 * 9 7 2 18 18 H 0.97007 * 119.99766 * 359.97438 * 1 2 3 19 19 H 1.00899 * 110.99853 * 188.16578 * 10 9 7 20 20 H 1.09000 * 115.56491 * 345.91557 * 11 10 9 21 21 H 1.09002 * 117.49746 * 145.02416 * 12 11 10 22 22 H 1.08997 * 117.49840 * 0.02562 * 12 11 10 23 23 H 1.08997 * 117.49812 * 107.48453 * 13 12 11 24 24 H 1.09001 * 117.49514 * 252.47269 * 13 12 11 25 25 H 1.09003 * 110.48555 * 214.40384 * 14 9 7 26 26 H 1.09006 * 110.48574 * 337.04624 * 14 9 7 27 27 H 1.08998 * 110.72234 * 279.57467 * 15 14 9 28 28 H 1.09001 * 110.76758 * 156.21817 * 15 14 9 29 29 H 1.09003 * 110.48585 * 203.40295 * 16 15 14 30 30 H 1.09004 * 110.49018 * 80.76380 * 16 15 14 31 31 H 1.08999 * 110.02799 * 359.95107 * 17 9 7 32 32 H 1.08993 * 110.02965 * 121.33469 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3941 2.1057 -1.3950 5 1 1.5017 2.6209 0.8002 6 1 3.5943 1.4126 0.5949 7 6 2.0045 -1.1941 -0.0005 8 1 1.4672 -2.1278 0.0769 9 6 3.5076 -1.1963 -0.1093 10 7 4.0988 -0.5715 1.0815 11 6 3.8036 -1.3550 2.2886 12 6 3.9159 -0.6428 3.6381 13 6 4.9701 -1.6730 3.2274 14 6 4.0244 -2.6421 -0.2592 15 6 4.1855 -2.8305 -1.7888 16 6 4.7144 -1.4497 -2.2500 17 6 3.9457 -0.4384 -1.3747 18 1 -0.4850 0.8401 0.0004 19 1 5.0932 -0.4444 0.9672 20 1 3.0240 -2.1092 2.1809 21 1 3.2102 -0.9284 4.4182 22 1 4.2084 0.4071 3.6302 23 1 5.9560 -1.3007 2.9492 24 1 4.9581 -2.6361 3.7377 25 1 4.9851 -2.7578 0.2426 26 1 3.2974 -3.3502 0.1387 27 1 3.2246 -3.0510 -2.2536 28 1 4.9106 -3.6144 -2.0074 29 1 4.4910 -1.2885 -3.3047 30 1 5.7867 -1.3722 -2.0701 31 1 3.0711 -0.0697 -1.9106 32 1 4.5963 0.3935 -1.1051 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = 8.440379 kcal Electronic energy + Delta-G solvation = -13086.188050 eV Core-core repulsion = 11046.516136 eV Total energy + Delta-G solvation = -2039.671915 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.05020 -37.48966 -34.44765 -32.72200 -29.57196 -28.55879 -25.50431 -23.07927 -22.27133 -21.13526 -20.60690 -18.41537 -16.89790 -16.71691 -16.01037 -15.74558 -14.90930 -14.74629 -14.08103 -13.66015 -13.54404 -13.17196 -12.75546 -12.32070 -12.26146 -12.11355 -11.76252 -11.66452 -11.41686 -11.27386 -11.10340 -10.92803 -10.86407 -10.63692 -8.50931 -8.19774 -6.26363 1.46117 1.54421 1.87206 2.59127 3.07303 3.24089 3.54735 4.03858 4.06059 4.19721 4.22629 4.33777 4.58281 4.69146 4.85059 4.89168 4.90106 4.96021 4.97359 5.08471 5.11335 5.23727 5.31549 5.35932 5.40295 5.51041 5.66486 5.86566 6.15511 6.65665 6.74008 7.10455 7.49713 8.94738 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.022003 C = 0.014647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.587070 B = 1272.259349 C = 1911.231551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.026 3.974 3 Si 0.925 3.075 4 H -0.299 1.299 5 H -0.327 1.327 6 H -0.164 1.164 7 C -0.489 4.489 8 H 0.020 0.980 9 C 0.208 3.792 10 N -0.652 5.652 11 C 0.036 3.964 12 C -0.189 4.189 13 C -0.188 4.188 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.129 4.129 18 H 0.257 0.743 19 H 0.329 0.671 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.677 -2.269 1.001 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.171 4.171 3 Si 0.753 3.247 4 H -0.227 1.227 5 H -0.257 1.257 6 H -0.084 1.084 7 C -0.527 4.527 8 H 0.039 0.961 9 C 0.119 3.881 10 N -0.282 5.282 11 C -0.075 4.075 12 C -0.228 4.228 13 C -0.227 4.227 14 C -0.167 4.167 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.168 4.168 18 H 0.066 0.934 19 H 0.149 0.851 20 H 0.100 0.900 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.123 0.877 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.040 -1.740 1.083 13.200 hybrid contribution -0.445 0.075 -0.037 0.453 sum 12.595 -1.665 1.046 12.747 Atomic orbital electron populations 1.70121 1.08879 1.27544 1.53358 1.25789 0.94858 1.03488 0.92986 0.86434 0.84722 0.77019 0.76540 1.22650 1.25698 1.08444 1.21009 0.90605 0.91845 1.49278 0.96140 1.19516 0.92049 0.89818 0.86714 1.60957 1.15781 1.49131 1.02321 1.22059 0.99491 0.98389 0.87580 1.23070 1.02818 0.98113 0.98779 1.23466 0.94483 1.00130 1.04612 1.22890 0.99113 0.97842 0.96817 1.22361 1.00172 0.97525 0.95188 1.22291 0.99735 0.94030 0.98790 1.22513 0.98849 0.98648 0.96748 0.93415 0.85072 0.89990 0.89316 0.89238 0.87714 0.88260 0.91287 0.94637 0.93681 0.90005 0.91575 0.89728 0.94243 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16 2 C 0.03 1.54 5.23 84.66 0.44 1.98 16 3 Si 0.93 46.07 23.99 68.60 1.65 47.72 16 4 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 5 H -0.33 -17.21 7.11 99.48 0.71 -16.50 16 6 H -0.16 -7.13 4.96 99.48 0.49 -6.63 16 7 C -0.49 -27.49 7.52 25.60 0.19 -27.30 16 8 H 0.02 1.30 7.73 -2.91 -0.02 1.28 16 9 C 0.21 8.94 0.37 3.51 0.00 8.94 16 10 N -0.65 -25.41 3.24 -448.24 -1.45 -26.86 16 11 C 0.04 1.34 5.00 44.94 0.22 1.57 16 12 C -0.19 -6.19 10.46 30.60 0.32 -5.87 16 13 C -0.19 -5.21 10.23 30.62 0.31 -4.90 16 14 C -0.13 -4.71 4.97 31.69 0.16 -4.56 16 15 C -0.11 -3.74 6.91 31.91 0.22 -3.52 16 16 C -0.11 -3.43 6.83 31.67 0.22 -3.21 16 17 C -0.13 -5.11 4.14 31.32 0.13 -4.98 16 18 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 19 H 0.33 10.83 8.34 -89.69 -0.75 10.09 16 20 H 0.08 3.61 7.10 -2.39 -0.02 3.59 16 21 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 22 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 23 H 0.10 2.51 8.07 -2.39 -0.02 2.50 16 24 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.07 2.20 7.92 -2.39 -0.02 2.18 16 26 H 0.03 1.46 7.63 -2.38 -0.02 1.44 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.81 6.10 -2.39 -0.01 1.80 16 32 H 0.07 2.37 6.90 -2.39 -0.02 2.35 16 Total: -1.00 -66.64 247.09 2.84 -63.81 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.13 Total: 19.12 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 2.22 Total: -41.84 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.16 Total: -88.81 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.65 Total: 47.72 kcal Total: -66.64 2.84 -63.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.246 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds