Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00106 * 2 1 4 4 H 1.48503 * 109.46884 * 270.00286 * 3 2 1 5 5 H 1.48503 * 109.46887 * 29.99810 * 3 2 1 6 6 H 1.48496 * 109.47128 * 150.00230 * 3 2 1 7 7 C 1.37877 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00401 * 186.65648 * 7 2 1 9 9 C 1.50703 * 120.00136 * 6.66076 * 7 2 1 10 10 H 1.09004 * 109.46489 * 329.00784 * 9 7 2 11 11 C 1.52998 * 109.47443 * 209.01171 * 9 7 2 12 12 N 1.46903 * 109.47057 * 65.41280 * 11 9 7 13 13 C 1.50701 * 109.47418 * 89.00604 * 9 7 2 14 14 C 1.29441 * 117.96104 * 240.00273 * 13 9 7 15 15 C 1.50072 * 124.07161 * 180.49417 * 14 13 9 16 16 C 1.53019 * 110.14705 * 342.86326 * 15 14 13 17 17 C 1.53395 * 108.43799 * 49.44302 * 16 15 14 18 18 C 1.50066 * 117.95880 * 60.02445 * 13 9 7 19 19 H 0.96998 * 119.99883 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47440 * 185.41529 * 11 9 7 21 21 H 1.09004 * 109.46852 * 305.41493 * 11 9 7 22 22 H 1.00895 * 110.99809 * 56.04937 * 12 11 9 23 23 H 1.00901 * 110.99604 * 180.02562 * 12 11 9 24 24 H 1.07993 * 117.96366 * 0.47118 * 14 13 9 25 25 H 1.09001 * 109.35617 * 222.66115 * 15 14 13 26 26 H 1.08994 * 109.25076 * 103.00881 * 15 14 13 27 27 H 1.09000 * 109.64668 * 289.75415 * 16 15 14 28 28 H 1.08999 * 109.64426 * 169.12392 * 16 15 14 29 29 H 1.09002 * 109.64407 * 52.24259 * 17 16 15 30 30 H 1.09001 * 109.64452 * 172.88133 * 17 16 15 31 31 H 1.08996 * 109.35999 * 42.63981 * 18 13 9 32 32 H 1.09006 * 109.35740 * 283.05067 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1973 0.1079 9 6 1.2587 -2.4947 -0.1525 10 1 0.2654 -2.3972 0.2856 11 6 2.0248 -3.6087 0.5638 12 7 2.0367 -3.3439 2.0087 13 6 1.1315 -2.8330 -1.6155 14 6 -0.0589 -2.9514 -2.1098 15 6 -0.3441 -3.2943 -3.5427 16 6 0.9035 -3.0635 -4.3982 17 6 2.0936 -3.7495 -3.7155 18 6 2.3929 -3.0119 -2.4086 19 1 -0.4850 0.8400 0.0004 20 1 1.5378 -4.5650 0.3736 21 1 3.0490 -3.6423 0.1921 22 1 1.0983 -3.2441 2.3657 23 1 2.5376 -4.0661 2.5045 24 1 -0.8992 -2.7941 -1.4499 25 1 -1.1553 -2.6658 -3.9101 26 1 -0.6395 -4.3413 -3.6098 27 1 1.0966 -1.9941 -4.4835 28 1 0.7528 -3.4919 -5.3890 29 1 1.8438 -4.7886 -3.5008 30 1 2.9653 -3.7064 -4.3684 31 1 3.1086 -3.5894 -1.8235 32 1 2.8192 -2.0345 -2.6348 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = -10.756322 kcal Electronic energy + Delta-G solvation = -12708.787168 eV Core-core repulsion = 10668.282822 eV Total energy + Delta-G solvation = -2040.504346 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.99585 -34.81888 -32.19428 -30.72097 -29.94360 -26.89937 -24.05196 -22.75059 -21.32448 -19.70861 -16.74056 -16.26077 -15.27404 -14.56524 -14.02853 -13.54241 -13.38117 -13.06964 -13.00525 -12.08901 -11.90752 -11.64229 -11.43240 -11.07243 -10.79430 -10.62417 -10.44534 -10.20816 -9.82480 -9.56807 -9.17225 -8.83002 -8.28676 -7.67053 -7.43890 -5.87867 -3.85171 3.37861 3.45283 3.48603 3.58898 4.56443 5.34153 5.45150 5.47294 5.55004 5.64560 6.07578 6.18086 6.20447 6.24617 6.27937 6.36131 6.49733 6.52359 6.59942 6.71230 6.73510 6.96523 7.06200 7.32352 7.76169 7.87075 8.02979 8.16797 8.34265 8.36113 8.62790 9.17420 9.74093 11.21662 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.014476 C = 0.011706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.345155 B = 1933.743226 C = 2391.322026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.476 4.476 8 H 0.053 0.947 9 C 0.061 3.939 10 H 0.057 0.943 11 C 0.078 3.922 12 N -0.833 5.833 13 C -0.065 4.065 14 C -0.205 4.205 15 C -0.076 4.076 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.075 4.075 19 H 0.257 0.743 20 H -0.007 1.007 21 H 0.054 0.946 22 H 0.335 0.665 23 H 0.317 0.683 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -6.906 -4.493 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.042 3.958 10 H 0.075 0.925 11 C -0.052 4.052 12 N -0.360 5.360 13 C -0.066 4.066 14 C -0.224 4.224 15 C -0.113 4.113 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.112 4.112 19 H 0.067 0.933 20 H 0.012 0.988 21 H 0.072 0.928 22 H 0.147 0.853 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.847 -6.104 -4.675 7.907 hybrid contribution -0.152 0.237 0.056 0.288 sum 1.695 -5.867 -4.618 7.656 Atomic orbital electron populations 1.69929 1.05831 1.26141 1.51215 1.24915 0.94733 0.98874 0.95298 0.86706 0.80089 0.84079 0.77786 1.21022 1.21550 1.19954 1.20815 0.93160 0.89629 1.47771 0.92828 1.18169 0.97807 0.92507 0.87288 0.92483 1.21883 0.99673 0.95708 0.87959 1.58518 1.21658 1.51501 1.04371 1.21249 0.92879 0.93810 0.98660 1.21529 0.97391 1.08167 0.95278 1.20272 0.96944 0.99588 0.94499 1.21564 0.95749 1.00778 0.97386 1.21622 0.97420 0.99217 0.97319 1.20297 0.96789 1.00174 0.93982 0.93336 0.98850 0.92796 0.85311 0.87269 0.88651 0.92687 0.92875 0.91995 0.93152 0.92644 0.92890 0.92171 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 12.85 55.43 0.71 -25.42 16 2 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 3 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.48 -13.03 7.65 -34.44 -0.26 -13.29 16 8 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.06 1.50 2.09 -92.92 -0.19 1.31 16 10 H 0.06 1.58 6.81 -51.93 -0.35 1.22 16 11 C 0.08 1.66 5.79 -3.82 -0.02 1.64 16 12 N -0.83 -16.62 9.35 -10.37 -0.10 -16.71 16 13 C -0.06 -1.45 4.70 -100.94 -0.47 -1.93 16 14 C -0.21 -4.46 9.40 -35.90 -0.34 -4.80 16 15 C -0.08 -1.35 6.11 -28.18 -0.17 -1.52 16 16 C -0.12 -1.93 6.01 -26.52 -0.16 -2.09 16 17 C -0.12 -1.93 6.01 -26.51 -0.16 -2.09 16 18 C -0.08 -1.48 5.33 -28.17 -0.15 -1.63 16 19 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 20 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 21 H 0.05 1.14 7.01 -51.93 -0.36 0.77 16 22 H 0.33 6.57 8.99 -39.29 -0.35 6.21 16 23 H 0.32 5.21 9.08 -39.29 -0.36 4.85 16 24 H 0.10 2.25 7.56 -52.49 -0.40 1.85 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -29.20 258.96 -7.63 -36.83 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.10 Total: 7.15 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.03 Total: -22.74 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.62 Total: -42.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.20 -7.63 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.076 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds