Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00106 * 2 1 4 4 H 1.48503 * 109.46884 * 270.00286 * 3 2 1 5 5 H 1.48503 * 109.46887 * 29.99810 * 3 2 1 6 6 H 1.48496 * 109.47128 * 150.00230 * 3 2 1 7 7 C 1.37877 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00401 * 186.65648 * 7 2 1 9 9 C 1.50703 * 120.00136 * 6.66076 * 7 2 1 10 10 H 1.09004 * 109.46489 * 329.00784 * 9 7 2 11 11 C 1.52998 * 109.47443 * 209.01171 * 9 7 2 12 12 N 1.46903 * 109.47057 * 65.41280 * 11 9 7 13 13 C 1.50701 * 109.47418 * 89.00604 * 9 7 2 14 14 C 1.29441 * 117.96104 * 240.00273 * 13 9 7 15 15 C 1.50072 * 124.07161 * 180.49417 * 14 13 9 16 16 C 1.53019 * 110.14705 * 342.86326 * 15 14 13 17 17 C 1.53395 * 108.43799 * 49.44302 * 16 15 14 18 18 C 1.50066 * 117.95880 * 60.02445 * 13 9 7 19 19 H 0.96998 * 119.99883 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47440 * 185.41529 * 11 9 7 21 21 H 1.09004 * 109.46852 * 305.41493 * 11 9 7 22 22 H 1.00895 * 110.99809 * 56.04937 * 12 11 9 23 23 H 1.00901 * 110.99604 * 180.02562 * 12 11 9 24 24 H 1.07993 * 117.96366 * 0.47118 * 14 13 9 25 25 H 1.09001 * 109.35617 * 222.66115 * 15 14 13 26 26 H 1.08994 * 109.25076 * 103.00881 * 15 14 13 27 27 H 1.09000 * 109.64668 * 289.75415 * 16 15 14 28 28 H 1.08999 * 109.64426 * 169.12392 * 16 15 14 29 29 H 1.09002 * 109.64407 * 52.24259 * 17 16 15 30 30 H 1.09001 * 109.64452 * 172.88133 * 17 16 15 31 31 H 1.08996 * 109.35999 * 42.63981 * 18 13 9 32 32 H 1.09006 * 109.35740 * 283.05067 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1973 0.1079 9 6 1.2587 -2.4947 -0.1525 10 1 0.2654 -2.3972 0.2856 11 6 2.0248 -3.6087 0.5638 12 7 2.0367 -3.3439 2.0087 13 6 1.1315 -2.8330 -1.6155 14 6 -0.0589 -2.9514 -2.1098 15 6 -0.3441 -3.2943 -3.5427 16 6 0.9035 -3.0635 -4.3982 17 6 2.0936 -3.7495 -3.7155 18 6 2.3929 -3.0119 -2.4086 19 1 -0.4850 0.8400 0.0004 20 1 1.5378 -4.5650 0.3736 21 1 3.0490 -3.6423 0.1921 22 1 1.0983 -3.2441 2.3657 23 1 2.5376 -4.0661 2.5045 24 1 -0.8992 -2.7941 -1.4499 25 1 -1.1553 -2.6658 -3.9101 26 1 -0.6395 -4.3413 -3.6098 27 1 1.0966 -1.9941 -4.4835 28 1 0.7528 -3.4919 -5.3890 29 1 1.8438 -4.7886 -3.5008 30 1 2.9653 -3.7064 -4.3684 31 1 3.1086 -3.5894 -1.8235 32 1 2.8192 -2.0345 -2.6348 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -29.343970 kcal Electronic energy + Delta-G solvation = -12709.593189 eV Core-core repulsion = 10668.282822 eV Total energy + Delta-G solvation = -2041.310367 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59221 -36.52035 -34.18478 -32.40938 -31.43225 -28.72646 -26.03405 -24.26777 -22.80861 -21.45415 -18.54709 -18.12870 -16.87763 -16.57095 -15.67172 -15.13242 -14.91342 -14.78263 -14.47314 -14.03001 -13.52901 -13.20148 -12.95757 -12.85998 -12.62185 -12.46597 -12.37106 -11.60895 -11.45771 -11.35898 -10.89775 -10.71148 -10.38234 -9.30119 -9.17034 -8.02217 -6.04974 1.39848 1.41326 1.50854 1.83943 2.49183 3.29620 3.95567 4.04359 4.16236 4.19302 4.54769 4.65063 4.67323 4.74834 4.81787 4.88924 4.96628 5.09537 5.16071 5.24928 5.26277 5.33132 5.57748 5.59235 5.79410 5.87017 6.12925 6.37944 6.50131 6.77014 6.89097 7.04352 7.56557 9.06000 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.014476 C = 0.011706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.345155 B = 1933.743226 C = 2391.322026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.476 4.476 8 H 0.045 0.955 9 C 0.059 3.941 10 H 0.017 0.983 11 C 0.087 3.913 12 N -0.845 5.845 13 C -0.083 4.083 14 C -0.206 4.206 15 C -0.075 4.075 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.073 4.073 19 H 0.254 0.746 20 H 0.008 0.992 21 H 0.058 0.942 22 H 0.335 0.665 23 H 0.339 0.661 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 -7.858 -5.810 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.040 3.960 10 H 0.035 0.965 11 C -0.044 4.044 12 N -0.374 5.374 13 C -0.084 4.084 14 C -0.225 4.225 15 C -0.112 4.112 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.110 4.110 19 H 0.063 0.937 20 H 0.027 0.973 21 H 0.076 0.924 22 H 0.147 0.853 23 H 0.152 0.848 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.924 -7.071 -5.985 9.715 hybrid contribution -0.511 0.483 0.531 0.881 sum 2.413 -6.588 -5.454 8.887 Atomic orbital electron populations 1.70066 1.07060 1.26478 1.52887 1.25591 0.95441 1.01895 0.95648 0.85818 0.78965 0.80583 0.77855 1.20520 1.21534 1.19472 1.21040 0.92760 0.91019 1.46651 0.93689 1.18110 0.95703 0.92875 0.89320 0.96479 1.21699 0.99318 0.95021 0.88344 1.58447 1.22056 1.52843 1.04068 1.21298 0.94534 0.94857 0.97720 1.21701 0.96146 1.07323 0.97313 1.20317 0.98047 1.01029 0.91799 1.21577 0.94837 1.00028 0.98838 1.21604 0.98451 0.99202 0.95617 1.20279 0.95139 0.99850 0.95691 0.93680 0.97347 0.92407 0.85303 0.84827 0.91837 0.92394 0.90435 0.93805 0.89580 0.91286 0.90263 0.91510 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.62 12.85 21.45 0.28 -55.34 16 2 C 0.01 0.66 5.45 84.65 0.46 1.12 16 3 Si 0.94 45.62 29.54 68.60 2.03 47.64 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.48 -26.40 7.65 25.60 0.20 -26.20 16 8 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 9 C 0.06 2.94 2.09 -12.29 -0.03 2.92 16 10 H 0.02 0.98 6.81 -2.38 -0.02 0.96 16 11 C 0.09 3.63 5.79 86.30 0.50 4.13 16 12 N -0.84 -33.21 9.35 -186.72 -1.75 -34.95 16 13 C -0.08 -3.72 4.70 -15.09 -0.07 -3.79 16 14 C -0.21 -9.00 9.40 27.04 0.25 -8.74 16 15 C -0.07 -2.52 6.11 29.66 0.18 -2.34 16 16 C -0.12 -3.44 6.01 30.73 0.18 -3.25 16 17 C -0.11 -3.26 6.01 30.74 0.18 -3.07 16 18 C -0.07 -2.75 5.33 29.66 0.16 -2.59 16 19 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 20 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 21 H 0.06 2.36 7.01 -2.39 -0.02 2.35 16 22 H 0.33 13.20 8.99 -89.70 -0.81 12.39 16 23 H 0.34 10.65 9.08 -89.69 -0.81 9.83 16 24 H 0.06 3.12 7.56 -2.91 -0.02 3.10 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.39 6.66 -2.39 -0.02 2.38 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -63.06 258.96 2.06 -61.00 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.52 Total: 23.48 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 2.02 Total: -41.82 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -1.47 Total: -90.30 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -63.06 2.06 -61.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.657 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds