Wall clock time and date at job start Mon Mar 30 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47024 * 300.00193 * 3 2 1 6 6 H 1.48493 * 109.46690 * 60.00023 * 3 2 1 7 7 C 1.37874 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47060 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47345 * 304.99519 * 10 9 7 12 12 N 1.46902 * 109.47728 * 64.99776 * 10 9 7 13 13 C 1.53008 * 109.47213 * 184.99981 * 10 9 7 14 14 H 1.08995 * 109.80836 * 60.52215 * 13 10 9 15 15 C 1.53024 * 109.63814 * 299.99679 * 13 10 9 16 16 C 1.50070 * 110.03521 * 190.94793 * 15 13 10 17 17 C 1.29172 * 124.28199 * 17.04512 * 16 15 13 18 18 C 1.50070 * 123.99416 * 359.61667 * 17 16 15 19 19 C 1.53019 * 110.14796 * 17.08522 * 18 17 16 20 20 H 0.97007 * 119.99786 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47468 * 60.00115 * 9 7 2 22 22 H 1.09004 * 109.47278 * 299.99576 * 9 7 2 23 23 H 1.00896 * 110.99473 * 296.04879 * 12 10 9 24 24 H 1.00899 * 110.99588 * 59.99814 * 12 10 9 25 25 H 1.09002 * 109.35972 * 311.08657 * 15 13 10 26 26 H 1.08998 * 109.35954 * 70.81421 * 15 13 10 27 27 H 1.08001 * 117.96524 * 197.04376 * 16 15 13 28 28 H 1.07999 * 118.04447 * 179.55051 * 17 16 15 29 29 H 1.09002 * 109.35816 * 256.88395 * 18 17 16 30 30 H 1.08994 * 109.24789 * 137.22480 * 18 17 16 31 31 H 1.08997 * 109.64626 * 190.88377 * 19 18 17 32 32 H 1.09001 * 109.81915 * 70.35509 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5552 -0.8424 12 7 3.0085 -3.6539 1.2546 13 6 1.4844 -4.9835 -0.1263 14 1 0.9234 -4.9993 -1.0606 15 6 0.5227 -5.1376 1.0540 16 6 -0.0291 -6.5327 1.0889 17 6 0.4872 -7.5353 0.4590 18 6 1.7105 -7.4433 -0.4054 19 6 2.4758 -6.1538 -0.1002 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.5701 -2.8192 1.3308 24 1 2.3962 -3.7517 2.0507 25 1 1.0559 -4.9366 1.9832 26 1 -0.2972 -4.4274 0.9470 27 1 -0.9158 -6.7120 1.6788 28 1 0.0106 -8.4991 0.5610 29 1 1.4131 -7.4472 -1.4541 30 1 2.3544 -8.3006 -0.2093 31 1 3.2466 -5.9978 -0.8549 32 1 2.9364 -6.2219 0.8853 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:39 Heat of formation + Delta-G solvation = -14.596073 kcal Electronic energy + Delta-G solvation = -12471.679989 eV Core-core repulsion = 10431.009138 eV Total energy + Delta-G solvation = -2040.670850 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.64923 -35.03369 -32.44194 -30.45859 -29.50697 -27.89906 -24.48488 -23.05130 -21.37986 -19.10582 -17.41915 -16.56022 -15.54976 -14.91202 -14.57450 -13.69257 -13.37151 -13.24601 -12.59250 -12.27948 -12.14992 -11.76787 -11.68934 -11.43595 -10.92755 -10.76518 -10.30565 -10.19838 -10.11739 -9.64540 -9.45164 -8.97065 -8.65368 -8.41423 -7.58807 -6.04553 -4.07744 2.60623 3.27509 3.35629 3.39205 4.41717 5.06608 5.19175 5.30334 5.39931 5.64535 5.69093 5.69683 5.82082 5.99359 6.05755 6.22842 6.39119 6.48127 6.50013 6.64221 6.71897 6.98189 6.99388 7.06741 7.28590 7.54550 7.68230 7.91452 8.19838 8.30797 8.44250 9.00084 9.57090 11.06271 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068398 B = 0.008307 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.269364 B = 3369.809168 C = 3570.564829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.055 0.945 9 C -0.007 4.007 10 C 0.096 3.904 11 H 0.064 0.936 12 N -0.841 5.841 13 C -0.076 4.076 14 H 0.064 0.936 15 C -0.088 4.088 16 C -0.144 4.144 17 C -0.168 4.168 18 C -0.092 4.092 19 C -0.103 4.103 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.018 0.982 23 H 0.341 0.659 24 H 0.326 0.674 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -10.934 1.202 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.046 4.046 10 C -0.016 4.016 11 H 0.082 0.918 12 N -0.370 5.370 13 C -0.095 4.095 14 H 0.082 0.918 15 C -0.125 4.125 16 C -0.162 4.162 17 C -0.187 4.187 18 C -0.129 4.129 19 C -0.140 4.140 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.153 0.847 24 H 0.138 0.862 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.159 -11.486 0.911 11.722 hybrid contribution -0.379 1.862 0.199 1.911 sum 1.780 -9.623 1.109 9.849 Atomic orbital electron populations 1.69979 1.06070 1.26469 1.50673 1.25025 0.94816 0.99262 0.95261 0.86564 0.80143 0.83903 0.77557 1.19720 1.21058 1.21083 1.21259 0.92917 0.91121 1.50754 0.92650 1.19849 0.94806 0.92413 0.97521 1.21493 0.94824 0.93195 0.92059 0.91763 1.59280 1.28132 1.45355 1.04234 1.21246 0.95599 0.95009 0.97688 0.91768 1.20551 0.99082 0.93529 0.99365 1.22115 0.99199 0.95611 0.99274 1.21907 0.98523 0.98003 1.00226 1.20491 0.95065 0.98672 0.98633 1.21517 0.97269 0.93015 1.02237 0.93080 0.96611 0.96371 0.84688 0.86176 0.90671 0.90711 0.88787 0.88905 0.91652 0.92001 0.92461 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.31 8.55 -34.44 -0.29 -14.60 16 8 H 0.06 1.48 7.15 -52.48 -0.38 1.10 16 9 C -0.01 -0.19 4.14 -27.88 -0.12 -0.30 16 10 C 0.10 1.94 2.59 -67.71 -0.18 1.77 16 11 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 12 N -0.84 -15.69 8.50 -4.66 -0.04 -15.73 16 13 C -0.08 -1.34 2.13 -90.40 -0.19 -1.54 16 14 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 15 C -0.09 -1.48 4.67 -28.18 -0.13 -1.62 16 16 C -0.14 -2.12 9.78 -35.83 -0.35 -2.47 16 17 C -0.17 -2.31 9.80 -35.83 -0.35 -2.66 16 18 C -0.09 -1.23 6.11 -28.18 -0.17 -1.40 16 19 C -0.10 -1.58 5.02 -26.52 -0.13 -1.71 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.02 0.48 6.98 -51.93 -0.36 0.11 16 23 H 0.34 6.62 7.90 -39.29 -0.31 6.31 16 24 H 0.33 5.90 6.96 -39.29 -0.27 5.63 16 25 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 26 H 0.07 1.38 7.18 -51.93 -0.37 1.01 16 27 H 0.09 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 LS Contribution 254.31 15.07 3.83 3.83 Total: -1.00 -28.54 254.31 -7.44 -35.98 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.94 Total: 8.30 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.01 Total: -22.99 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.70 Total: -41.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.54 -7.44 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.388 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds