Wall clock time and date at job start Mon Mar 30 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47024 * 300.00193 * 3 2 1 6 6 H 1.48493 * 109.46690 * 60.00023 * 3 2 1 7 7 C 1.37874 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47060 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47345 * 304.99519 * 10 9 7 12 12 N 1.46902 * 109.47728 * 64.99776 * 10 9 7 13 13 C 1.53008 * 109.47213 * 184.99981 * 10 9 7 14 14 H 1.08995 * 109.80836 * 60.52215 * 13 10 9 15 15 C 1.53024 * 109.63814 * 299.99679 * 13 10 9 16 16 C 1.50070 * 110.03521 * 190.94793 * 15 13 10 17 17 C 1.29172 * 124.28199 * 17.04512 * 16 15 13 18 18 C 1.50070 * 123.99416 * 359.61667 * 17 16 15 19 19 C 1.53019 * 110.14796 * 17.08522 * 18 17 16 20 20 H 0.97007 * 119.99786 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47468 * 60.00115 * 9 7 2 22 22 H 1.09004 * 109.47278 * 299.99576 * 9 7 2 23 23 H 1.00896 * 110.99473 * 296.04879 * 12 10 9 24 24 H 1.00899 * 110.99588 * 59.99814 * 12 10 9 25 25 H 1.09002 * 109.35972 * 311.08657 * 15 13 10 26 26 H 1.08998 * 109.35954 * 70.81421 * 15 13 10 27 27 H 1.08001 * 117.96524 * 197.04376 * 16 15 13 28 28 H 1.07999 * 118.04447 * 179.55051 * 17 16 15 29 29 H 1.09002 * 109.35816 * 256.88395 * 18 17 16 30 30 H 1.08994 * 109.24789 * 137.22480 * 18 17 16 31 31 H 1.08997 * 109.64626 * 190.88377 * 19 18 17 32 32 H 1.09001 * 109.81915 * 70.35509 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5552 -0.8424 12 7 3.0085 -3.6539 1.2546 13 6 1.4844 -4.9835 -0.1263 14 1 0.9234 -4.9993 -1.0606 15 6 0.5227 -5.1376 1.0540 16 6 -0.0291 -6.5327 1.0889 17 6 0.4872 -7.5353 0.4590 18 6 1.7105 -7.4433 -0.4054 19 6 2.4758 -6.1538 -0.1002 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.5701 -2.8192 1.3308 24 1 2.3962 -3.7517 2.0507 25 1 1.0559 -4.9366 1.9832 26 1 -0.2972 -4.4274 0.9470 27 1 -0.9158 -6.7120 1.6788 28 1 0.0106 -8.4991 0.5610 29 1 1.4131 -7.4472 -1.4541 30 1 2.3544 -8.3006 -0.2093 31 1 3.2466 -5.9978 -0.8549 32 1 2.9364 -6.2219 0.8853 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:39 Heat of formation + Delta-G solvation = -32.139963 kcal Electronic energy + Delta-G solvation = -12472.440749 eV Core-core repulsion = 10431.009138 eV Total energy + Delta-G solvation = -2041.431611 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02456 -36.62886 -34.47927 -31.66507 -30.89057 -29.86513 -26.27945 -24.49836 -22.89906 -20.67569 -18.80466 -18.48544 -16.88956 -16.60109 -16.39695 -15.06938 -14.87049 -14.71008 -14.16265 -14.00720 -13.75708 -13.34490 -13.03923 -12.94165 -12.75628 -12.53481 -12.09976 -11.96253 -11.49364 -11.31537 -10.97012 -10.73479 -10.58856 -9.79512 -9.27268 -8.21611 -6.32709 1.37419 1.38648 1.49767 1.51102 2.38381 3.11438 3.86095 3.93590 4.00424 4.17883 4.38168 4.53620 4.57376 4.69320 4.80972 4.90827 4.97668 5.12962 5.13299 5.17463 5.25645 5.40942 5.47662 5.60538 5.70399 5.78448 5.89792 6.14861 6.20781 6.50259 6.78832 6.85502 7.36943 8.89701 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068398 B = 0.008307 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.269364 B = 3369.809168 C = 3570.564829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.107 3.893 11 H 0.056 0.944 12 N -0.825 5.825 13 C -0.074 4.074 14 H 0.052 0.948 15 C -0.084 4.084 16 C -0.165 4.165 17 C -0.156 4.156 18 C -0.092 4.092 19 C -0.096 4.096 20 H 0.262 0.738 21 H -0.019 1.019 22 H -0.003 1.003 23 H 0.338 0.662 24 H 0.331 0.669 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -12.002 1.360 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.080 0.920 9 C -0.037 4.037 10 C -0.005 4.005 11 H 0.074 0.926 12 N -0.354 5.354 13 C -0.093 4.093 14 H 0.071 0.929 15 C -0.121 4.121 16 C -0.183 4.183 17 C -0.174 4.174 18 C -0.129 4.129 19 C -0.133 4.133 20 H 0.070 0.930 21 H 0.000 1.000 22 H 0.016 0.984 23 H 0.150 0.850 24 H 0.144 0.856 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.349 -12.570 1.075 13.053 hybrid contribution -0.757 2.171 0.133 2.303 sum 2.592 -10.399 1.207 10.785 Atomic orbital electron populations 1.70116 1.07824 1.27513 1.51819 1.25953 0.95673 1.03278 0.94886 0.85429 0.79209 0.79045 0.77528 1.18437 1.20828 1.20582 1.21665 0.93424 0.92166 1.50121 0.91983 1.19758 0.94991 0.94093 0.94813 1.21303 0.93674 0.92970 0.92556 0.92585 1.59273 1.27522 1.44861 1.03702 1.21172 0.96051 0.94583 0.97518 0.92924 1.20425 0.97997 0.94815 0.98842 1.22073 1.00480 0.94464 1.01321 1.22192 0.98020 0.98688 0.98493 1.20547 0.95143 0.98174 0.99060 1.21439 0.96759 0.92979 1.02162 0.92966 1.00028 0.98425 0.85015 0.85647 0.90868 0.93536 0.87416 0.86209 0.90865 0.89469 0.92242 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -29.72 8.55 25.60 0.22 -29.50 16 8 H 0.06 3.29 7.15 -2.91 -0.02 3.27 16 9 C 0.00 0.11 4.14 29.85 0.12 0.23 16 10 C 0.11 4.39 2.59 44.92 0.12 4.50 16 11 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 12 N -0.83 -30.42 8.50 -168.66 -1.43 -31.85 16 13 C -0.07 -2.61 2.13 -10.65 -0.02 -2.63 16 14 H 0.05 1.96 8.12 -2.39 -0.02 1.94 16 15 C -0.08 -2.84 4.67 29.66 0.14 -2.70 16 16 C -0.17 -4.64 9.78 27.30 0.27 -4.37 16 17 C -0.16 -3.80 9.80 27.30 0.27 -3.54 16 18 C -0.09 -2.18 6.11 29.66 0.18 -2.00 16 19 C -0.10 -2.77 5.02 30.73 0.15 -2.62 16 20 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 21 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 22 H 0.00 -0.14 6.98 -2.38 -0.02 -0.16 16 23 H 0.34 12.91 7.90 -89.70 -0.71 12.20 16 24 H 0.33 11.89 6.96 -89.69 -0.62 11.27 16 25 H 0.07 2.45 6.17 -2.39 -0.01 2.44 16 26 H 0.05 1.80 7.18 -2.39 -0.02 1.79 16 27 H 0.11 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 Total: -1.00 -61.19 254.31 2.55 -58.64 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.23 Total: 25.64 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 1.91 Total: -42.17 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -1.15 Total: -88.28 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.19 2.55 -58.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.504 kcal (2) G-P(sol) polarization free energy of solvation -61.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds