Wall clock time and date at job start Mon Mar 30 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 H 1.09004 * 109.46916 * 55.00165 * 10 9 7 12 12 N 1.46897 * 109.47123 * 295.00166 * 10 9 7 13 13 C 1.52999 * 109.47057 * 174.99602 * 10 9 7 14 14 H 1.09000 * 109.64230 * 305.00409 * 13 10 9 15 15 C 1.53029 * 109.63730 * 65.42414 * 13 10 9 16 16 C 1.50161 * 110.09378 * 168.90366 * 15 13 10 17 17 C 1.29449 * 124.14580 * 343.27804 * 16 15 13 18 18 C 1.50063 * 124.07679 * 0.24754 * 17 16 15 19 19 C 1.53028 * 110.14624 * 342.86122 * 18 17 16 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.00901 * 111.00189 * 299.99469 * 12 10 9 24 24 H 1.00902 * 111.00355 * 63.95555 * 12 10 9 25 25 H 1.09002 * 109.35370 * 289.32392 * 15 13 10 26 26 H 1.08998 * 109.36000 * 48.91486 * 15 13 10 27 27 H 1.07998 * 117.89565 * 163.02864 * 16 15 13 28 28 H 1.08000 * 117.96273 * 180.25800 * 17 16 15 29 29 H 1.09004 * 109.35497 * 222.65688 * 18 17 16 30 30 H 1.09003 * 109.24865 * 103.00213 * 18 17 16 31 31 H 1.08996 * 109.64429 * 289.75460 * 19 18 17 32 32 H 1.09002 * 109.81578 * 169.22159 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 1 2.9331 -3.5574 0.8309 12 7 3.0025 -3.6506 -1.2667 13 6 1.4848 -4.9839 0.1177 14 1 0.8530 -4.9600 1.0056 15 6 0.6180 -5.1988 -1.1249 16 6 0.0808 -6.6010 -1.1430 17 6 0.5538 -7.5696 -0.4261 18 6 1.7029 -7.4258 0.5283 19 6 2.4823 -6.1442 0.2255 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.3867 -3.7464 -2.0602 24 1 3.5639 -2.8158 -1.3433 25 1 -0.2106 -4.4907 -1.1143 26 1 1.2201 -5.0340 -2.0184 27 1 -0.7555 -6.8133 -1.7924 28 1 0.0929 -8.5416 -0.5210 29 1 2.3664 -8.2847 0.4268 30 1 1.3200 -7.3836 1.5479 31 1 3.0184 -6.2553 -0.7169 32 1 3.1913 -5.9443 1.0290 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:42 Heat of formation + Delta-G solvation = -14.217538 kcal Electronic energy + Delta-G solvation = -12461.848736 eV Core-core repulsion = 10421.194300 eV Total energy + Delta-G solvation = -2040.654436 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.63054 -35.02718 -32.44024 -30.46847 -29.47789 -27.91755 -24.50441 -23.02640 -21.38923 -19.11342 -17.41586 -16.56755 -15.55694 -14.90250 -14.57815 -13.68524 -13.44890 -13.26125 -12.54342 -12.27734 -12.13503 -11.75319 -11.67723 -11.44151 -10.88842 -10.81100 -10.32750 -10.19391 -10.10531 -9.66861 -9.46554 -8.99000 -8.64081 -8.40562 -7.58822 -6.04063 -4.07522 2.59293 3.29975 3.34935 3.37077 4.41835 5.06233 5.18549 5.30504 5.39232 5.63828 5.68436 5.69287 5.81654 5.98903 6.05189 6.22027 6.38738 6.46330 6.49383 6.63826 6.72357 6.96850 6.98800 7.06946 7.27518 7.54306 7.68317 7.91582 8.19953 8.30796 8.44079 8.99872 9.57159 11.06709 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068407 B = 0.008243 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.217118 B = 3396.079048 C = 3572.466698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C -0.007 4.007 10 C 0.096 3.904 11 H 0.064 0.936 12 N -0.842 5.842 13 C -0.076 4.076 14 H 0.064 0.936 15 C -0.089 4.089 16 C -0.144 4.144 17 C -0.169 4.169 18 C -0.091 4.091 19 C -0.104 4.104 20 H 0.261 0.739 21 H 0.015 0.985 22 H 0.017 0.983 23 H 0.327 0.673 24 H 0.340 0.660 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -10.960 -1.150 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.045 4.045 10 C -0.016 4.016 11 H 0.083 0.917 12 N -0.371 5.371 13 C -0.095 4.095 14 H 0.083 0.917 15 C -0.126 4.126 16 C -0.162 4.162 17 C -0.187 4.187 18 C -0.128 4.128 19 C -0.142 4.142 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.139 0.861 24 H 0.153 0.847 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.201 -11.507 -0.864 11.747 hybrid contribution -0.347 1.853 -0.203 1.896 sum 1.854 -9.654 -1.066 9.888 Atomic orbital electron populations 1.69959 1.06071 1.26707 1.50476 1.25020 0.94819 0.99239 0.95234 0.86672 0.79580 0.83215 0.78612 1.20258 1.21344 1.20264 1.21183 0.92842 0.91141 1.51040 0.92754 1.19836 0.94779 0.92406 0.97486 1.21497 0.94881 0.93188 0.92005 0.91736 1.59294 1.28199 1.45377 1.04222 1.21241 0.95979 0.94930 0.97364 0.91741 1.20565 0.99462 0.93408 0.99182 1.22197 0.99241 0.95718 0.99051 1.21971 0.99083 0.98188 0.99426 1.20479 0.95622 0.98593 0.98098 1.21541 0.97355 0.93285 1.02001 0.92958 0.96632 0.96447 0.86098 0.84706 0.90816 0.90472 0.88730 0.88897 0.91972 0.91626 0.91167 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.38 8.55 -34.44 -0.29 -14.67 16 8 H 0.05 1.44 7.15 -52.49 -0.38 1.07 16 9 C -0.01 -0.17 4.28 -27.88 -0.12 -0.29 16 10 C 0.10 1.94 2.53 -67.72 -0.17 1.77 16 11 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 12 N -0.84 -15.73 8.66 -4.67 -0.04 -15.77 16 13 C -0.08 -1.34 2.06 -90.40 -0.19 -1.53 16 14 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 15 C -0.09 -1.49 4.78 -28.13 -0.13 -1.62 16 16 C -0.14 -2.11 9.80 -35.86 -0.35 -2.46 16 17 C -0.17 -2.30 9.80 -35.90 -0.35 -2.65 16 18 C -0.09 -1.22 6.12 -28.18 -0.17 -1.39 16 19 C -0.10 -1.60 5.10 -26.51 -0.14 -1.74 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.02 0.46 7.10 -51.93 -0.37 0.09 16 23 H 0.33 5.92 6.81 -39.29 -0.27 5.65 16 24 H 0.34 6.63 7.90 -39.29 -0.31 6.32 16 25 H 0.07 1.34 7.26 -51.93 -0.38 0.97 16 26 H 0.08 1.27 6.03 -51.93 -0.31 0.96 16 27 H 0.09 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 254.75 15.07 3.84 3.84 Total: -1.00 -28.57 254.75 -7.44 -36.01 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.94 Total: 8.36 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.01 Total: -23.02 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.70 Total: -41.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.57 -7.44 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.794 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds