Wall clock time and date at job start Mon Mar 30 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 H 1.09004 * 109.46916 * 55.00165 * 10 9 7 12 12 N 1.46897 * 109.47123 * 295.00166 * 10 9 7 13 13 C 1.52999 * 109.47057 * 174.99602 * 10 9 7 14 14 H 1.09000 * 109.64230 * 305.00409 * 13 10 9 15 15 C 1.53029 * 109.63730 * 65.42414 * 13 10 9 16 16 C 1.50161 * 110.09378 * 168.90366 * 15 13 10 17 17 C 1.29449 * 124.14580 * 343.27804 * 16 15 13 18 18 C 1.50063 * 124.07679 * 0.24754 * 17 16 15 19 19 C 1.53028 * 110.14624 * 342.86122 * 18 17 16 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.00901 * 111.00189 * 299.99469 * 12 10 9 24 24 H 1.00902 * 111.00355 * 63.95555 * 12 10 9 25 25 H 1.09002 * 109.35370 * 289.32392 * 15 13 10 26 26 H 1.08998 * 109.36000 * 48.91486 * 15 13 10 27 27 H 1.07998 * 117.89565 * 163.02864 * 16 15 13 28 28 H 1.08000 * 117.96273 * 180.25800 * 17 16 15 29 29 H 1.09004 * 109.35497 * 222.65688 * 18 17 16 30 30 H 1.09003 * 109.24865 * 103.00213 * 18 17 16 31 31 H 1.08996 * 109.64429 * 289.75460 * 19 18 17 32 32 H 1.09002 * 109.81578 * 169.22159 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 1 2.9331 -3.5574 0.8309 12 7 3.0025 -3.6506 -1.2667 13 6 1.4848 -4.9839 0.1177 14 1 0.8530 -4.9600 1.0056 15 6 0.6180 -5.1988 -1.1249 16 6 0.0808 -6.6010 -1.1430 17 6 0.5538 -7.5696 -0.4261 18 6 1.7029 -7.4258 0.5283 19 6 2.4823 -6.1442 0.2255 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.3867 -3.7464 -2.0602 24 1 3.5639 -2.8158 -1.3433 25 1 -0.2106 -4.4907 -1.1143 26 1 1.2201 -5.0340 -2.0184 27 1 -0.7555 -6.8133 -1.7924 28 1 0.0929 -8.5416 -0.5210 29 1 2.3664 -8.2847 0.4268 30 1 1.3200 -7.3836 1.5479 31 1 3.0184 -6.2553 -0.7169 32 1 3.1913 -5.9443 1.0290 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:42 Heat of formation + Delta-G solvation = -31.809489 kcal Electronic energy + Delta-G solvation = -12462.611580 eV Core-core repulsion = 10421.194300 eV Total energy + Delta-G solvation = -2041.417280 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00513 -36.62317 -34.47932 -31.66921 -30.85882 -29.88741 -26.30133 -24.46590 -22.91251 -20.69021 -18.77057 -18.51462 -16.90133 -16.60693 -16.38210 -15.08565 -14.89509 -14.74563 -14.14717 -13.96623 -13.74160 -13.32813 -13.04315 -12.93462 -12.71825 -12.57811 -12.07853 -11.98602 -11.49136 -11.35348 -10.98430 -10.74925 -10.57745 -9.77468 -9.27772 -8.21379 -6.32842 1.38423 1.40602 1.48376 1.49038 2.38533 3.11403 3.85874 3.94195 3.99277 4.16615 4.38845 4.52927 4.56963 4.69492 4.80879 4.90207 4.97356 5.12489 5.12811 5.17516 5.25197 5.40058 5.46517 5.60905 5.68887 5.77971 5.89719 6.14437 6.20351 6.50118 6.78292 6.84949 7.36767 8.89580 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068407 B = 0.008243 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.217118 B = 3396.079048 C = 3572.466698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.003 3.997 10 C 0.107 3.893 11 H 0.056 0.944 12 N -0.826 5.826 13 C -0.074 4.074 14 H 0.051 0.949 15 C -0.085 4.085 16 C -0.165 4.165 17 C -0.157 4.157 18 C -0.092 4.092 19 C -0.098 4.098 20 H 0.262 0.738 21 H -0.019 1.019 22 H -0.004 1.004 23 H 0.331 0.669 24 H 0.338 0.662 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -11.996 -1.296 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.036 4.036 10 C -0.005 4.005 11 H 0.075 0.925 12 N -0.355 5.355 13 C -0.093 4.093 14 H 0.069 0.931 15 C -0.122 4.122 16 C -0.183 4.183 17 C -0.175 4.175 18 C -0.129 4.129 19 C -0.135 4.135 20 H 0.071 0.929 21 H 0.000 1.000 22 H 0.014 0.986 23 H 0.144 0.856 24 H 0.150 0.850 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.409 -12.560 -1.017 13.054 hybrid contribution -0.731 2.151 -0.138 2.276 sum 2.678 -10.409 -1.155 10.810 Atomic orbital electron populations 1.70103 1.07841 1.27674 1.51651 1.25956 0.95672 1.03288 0.94827 0.85531 0.78222 0.78313 0.79149 1.18983 1.21222 1.19455 1.21607 0.93426 0.92170 1.50414 0.91959 1.19750 0.94981 0.94142 0.94739 1.21306 0.93711 0.92943 0.92511 0.92532 1.59288 1.27603 1.44890 1.03689 1.21166 0.96339 0.94496 0.97312 0.93083 1.20447 0.98422 0.94715 0.98604 1.22168 1.00595 0.94552 1.00976 1.22255 0.98409 0.98928 0.97917 1.20535 0.95789 0.98137 0.98400 1.21465 0.96822 0.93254 1.01970 0.92939 1.00040 0.98585 0.85567 0.85025 0.93491 0.90540 0.87278 0.86215 0.89427 0.90926 0.91459 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.91 8.55 25.60 0.22 -29.69 16 8 H 0.06 3.29 7.15 -2.91 -0.02 3.27 16 9 C 0.00 0.13 4.28 29.85 0.13 0.26 16 10 C 0.11 4.41 2.53 44.92 0.11 4.52 16 11 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 12 N -0.83 -30.53 8.66 -168.68 -1.46 -31.99 16 13 C -0.07 -2.61 2.06 -10.65 -0.02 -2.63 16 14 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 15 C -0.08 -2.84 4.78 29.69 0.14 -2.70 16 16 C -0.16 -4.59 9.80 27.06 0.27 -4.32 16 17 C -0.16 -3.83 9.80 27.03 0.26 -3.56 16 18 C -0.09 -2.18 6.12 29.66 0.18 -1.99 16 19 C -0.10 -2.83 5.10 30.74 0.16 -2.67 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 22 H 0.00 -0.23 7.10 -2.39 -0.02 -0.25 16 23 H 0.33 11.94 6.81 -89.69 -0.61 11.33 16 24 H 0.34 12.92 7.90 -89.69 -0.71 12.21 16 25 H 0.05 1.79 7.26 -2.39 -0.02 1.77 16 26 H 0.08 2.52 6.03 -2.39 -0.01 2.51 16 27 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -61.29 254.75 2.54 -58.75 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.22 Total: 25.95 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 1.91 Total: -42.31 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -1.18 Total: -88.53 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.29 2.54 -58.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.941 kcal (2) G-P(sol) polarization free energy of solvation -61.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds