Wall clock time and date at job start Mon Mar 30 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48490 * 109.47286 * 269.99976 * 3 2 1 5 5 H 1.48503 * 109.47017 * 29.99996 * 3 2 1 6 6 H 1.48500 * 109.47198 * 149.99515 * 3 2 1 7 7 C 1.37872 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00463 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47054 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47247 * 304.99893 * 10 9 7 12 12 N 1.46900 * 109.47232 * 65.00405 * 10 9 7 13 13 C 1.53007 * 109.47142 * 185.00381 * 10 9 7 14 14 H 1.09002 * 109.63678 * 300.42125 * 13 10 9 15 15 C 1.53024 * 109.64016 * 61.05438 * 13 10 9 16 16 C 1.50065 * 110.14177 * 169.12232 * 15 13 10 17 17 C 1.29444 * 124.08236 * 342.87009 * 16 15 13 18 18 C 1.50554 * 124.15480 * 0.40829 * 17 16 15 19 19 C 1.53025 * 109.88915 * 343.00481 * 18 17 16 20 20 H 0.97002 * 120.00370 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46887 * 60.00575 * 9 7 2 22 22 H 1.08998 * 109.47652 * 300.00652 * 9 7 2 23 23 H 1.00898 * 111.00189 * 59.99938 * 12 10 9 24 24 H 1.00895 * 111.00103 * 183.95429 * 12 10 9 25 25 H 1.08996 * 109.35936 * 289.32755 * 15 13 10 26 26 H 1.08994 * 109.35819 * 48.91625 * 15 13 10 27 27 H 1.08005 * 117.96416 * 162.88987 * 16 15 13 28 28 H 1.07999 * 117.96572 * 180.49416 * 17 16 15 29 29 H 1.08995 * 109.62935 * 222.78257 * 18 17 16 30 30 H 1.09001 * 109.34074 * 103.04102 * 18 17 16 31 31 H 1.09002 * 109.64203 * 289.57571 * 19 18 17 32 32 H 1.09002 * 109.64069 * 169.15954 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.5873 -3.1754 0.8422 12 7 3.6325 -3.2935 -1.2549 13 6 5.5465 -2.6383 0.1253 14 1 5.9834 -2.0936 -0.7117 15 6 5.9550 -1.9781 1.4440 16 6 7.4150 -2.2061 1.7055 17 6 8.1256 -3.1107 1.1118 18 6 7.5910 -4.0559 0.0691 19 6 6.0621 -4.0829 0.1258 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8746 -0.6807 -0.8904 23 1 4.0231 -2.8124 -2.0511 24 1 3.9015 -4.2660 -1.2524 25 1 5.7612 -0.9070 1.3870 26 1 5.3709 -2.4061 2.2585 27 1 7.9033 -1.5766 2.4347 28 1 9.1679 -3.1940 1.3822 29 1 7.9772 -5.0587 0.2515 30 1 7.9101 -3.7221 -0.9183 31 1 5.7380 -4.5873 1.0362 32 1 5.6724 -4.6114 -0.7443 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218398.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:45 Heat of formation + Delta-G solvation = -6.643150 kcal Electronic energy + Delta-G solvation = -12474.306083 eV Core-core repulsion = 10433.980097 eV Total energy + Delta-G solvation = -2040.325986 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.86289 -35.10781 -32.34532 -30.78731 -29.82225 -28.60911 -24.14549 -23.06687 -21.27564 -19.48854 -17.75591 -16.70200 -15.80004 -15.13228 -14.24668 -14.07042 -13.50198 -13.48453 -12.79263 -12.61463 -12.40014 -12.14866 -11.95117 -11.47194 -11.00188 -10.68440 -10.50101 -10.12574 -10.04204 -9.70010 -9.43858 -9.03145 -8.85986 -8.40454 -7.75534 -5.88718 -3.82771 2.40095 3.36937 3.44312 3.46255 4.55792 4.82499 4.92356 5.04508 5.26405 5.44025 5.47083 5.53802 5.64247 5.68938 5.78973 5.93506 6.04637 6.17733 6.20970 6.29163 6.41628 6.67599 6.78123 6.80796 7.07357 7.18814 7.42336 7.89046 8.06525 8.22972 8.75419 9.24692 9.74193 11.25449 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.009767 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.345931 B = 2866.032982 C = 3249.481717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.060 3.940 3 Si 0.874 3.126 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.008 4.008 10 C 0.112 3.888 11 H 0.072 0.928 12 N -0.825 5.825 13 C -0.123 4.123 14 H 0.064 0.936 15 C -0.087 4.087 16 C -0.145 4.145 17 C -0.170 4.170 18 C -0.087 4.087 19 C -0.118 4.118 20 H 0.259 0.741 21 H 0.021 0.979 22 H 0.007 0.993 23 H 0.331 0.669 24 H 0.321 0.679 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.249 -5.826 1.055 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.140 4.140 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.045 4.045 10 C 0.000 4.000 11 H 0.090 0.910 12 N -0.352 5.352 13 C -0.144 4.144 14 H 0.082 0.918 15 C -0.124 4.124 16 C -0.163 4.163 17 C -0.188 4.188 18 C -0.124 4.124 19 C -0.155 4.155 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.025 0.975 23 H 0.143 0.857 24 H 0.133 0.867 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.324 -5.529 1.266 15.406 hybrid contribution 1.570 0.896 -0.114 1.811 sum 15.894 -4.633 1.152 16.596 Atomic orbital electron populations 1.69917 1.06159 1.26356 1.52480 1.25034 0.94690 0.98757 0.95480 0.86876 0.80285 0.84373 0.78240 1.20634 1.21639 1.19303 1.21095 0.89134 0.94428 1.48338 0.90355 1.19672 0.97836 0.91009 0.96000 1.21467 0.88457 0.98008 0.92049 0.91013 1.58779 1.67519 1.04829 1.04076 1.22189 0.99536 0.95050 0.97611 0.91752 1.20518 0.92406 1.01677 0.97807 1.22218 0.96735 0.97915 0.99410 1.22066 0.99102 0.98185 0.99426 1.20492 0.95980 0.98113 0.97804 1.21691 0.94611 0.97443 1.01794 0.93084 0.96111 0.97472 0.85670 0.86670 0.90491 0.90562 0.88429 0.88662 0.91653 0.91470 0.91859 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 2 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 3 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.49 -14.23 9.39 -34.44 -0.32 -14.55 16 8 H 0.08 2.50 7.99 -52.49 -0.42 2.08 16 9 C -0.01 -0.18 3.50 -27.88 -0.10 -0.28 16 10 C 0.11 2.16 2.31 -67.71 -0.16 2.00 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 12 N -0.82 -15.16 8.84 -4.66 -0.04 -15.20 16 13 C -0.12 -1.92 1.98 -90.40 -0.18 -2.10 16 14 H 0.06 1.04 8.13 -51.93 -0.42 0.61 16 15 C -0.09 -1.33 4.79 -28.18 -0.14 -1.46 16 16 C -0.14 -1.92 9.80 -35.90 -0.35 -2.27 16 17 C -0.17 -2.07 9.82 -35.67 -0.35 -2.42 16 18 C -0.09 -1.01 6.16 -27.94 -0.17 -1.18 16 19 C -0.12 -1.54 5.12 -26.52 -0.14 -1.67 16 20 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 21 H 0.02 0.49 5.52 -51.93 -0.29 0.20 16 22 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 23 H 0.33 5.76 9.00 -39.29 -0.35 5.40 16 24 H 0.32 4.93 7.26 -39.29 -0.29 4.65 16 25 H 0.08 1.27 6.95 -51.93 -0.36 0.91 16 26 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 27 H 0.10 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.06 0.75 6.46 -51.93 -0.34 0.41 16 LS Contribution 253.31 15.07 3.82 3.82 Total: -1.00 -31.20 253.31 -7.10 -38.30 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.98 Total: 5.87 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.00 Total: -22.25 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.73 Total: -43.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.20 -7.10 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218398.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.655 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds