Wall clock time and date at job start Mon Mar 30 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48490 * 109.47286 * 269.99976 * 3 2 1 5 5 H 1.48503 * 109.47017 * 29.99996 * 3 2 1 6 6 H 1.48500 * 109.47198 * 149.99515 * 3 2 1 7 7 C 1.37872 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00463 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47054 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47247 * 304.99893 * 10 9 7 12 12 N 1.46900 * 109.47232 * 65.00405 * 10 9 7 13 13 C 1.53007 * 109.47142 * 185.00381 * 10 9 7 14 14 H 1.09002 * 109.63678 * 300.42125 * 13 10 9 15 15 C 1.53024 * 109.64016 * 61.05438 * 13 10 9 16 16 C 1.50065 * 110.14177 * 169.12232 * 15 13 10 17 17 C 1.29444 * 124.08236 * 342.87009 * 16 15 13 18 18 C 1.50554 * 124.15480 * 0.40829 * 17 16 15 19 19 C 1.53025 * 109.88915 * 343.00481 * 18 17 16 20 20 H 0.97002 * 120.00370 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46887 * 60.00575 * 9 7 2 22 22 H 1.08998 * 109.47652 * 300.00652 * 9 7 2 23 23 H 1.00898 * 111.00189 * 59.99938 * 12 10 9 24 24 H 1.00895 * 111.00103 * 183.95429 * 12 10 9 25 25 H 1.08996 * 109.35936 * 289.32755 * 15 13 10 26 26 H 1.08994 * 109.35819 * 48.91625 * 15 13 10 27 27 H 1.08005 * 117.96416 * 162.88987 * 16 15 13 28 28 H 1.07999 * 117.96572 * 180.49416 * 17 16 15 29 29 H 1.08995 * 109.62935 * 222.78257 * 18 17 16 30 30 H 1.09001 * 109.34074 * 103.04102 * 18 17 16 31 31 H 1.09002 * 109.64203 * 289.57571 * 19 18 17 32 32 H 1.09002 * 109.64069 * 169.15954 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.5873 -3.1754 0.8422 12 7 3.6325 -3.2935 -1.2549 13 6 5.5465 -2.6383 0.1253 14 1 5.9834 -2.0936 -0.7117 15 6 5.9550 -1.9781 1.4440 16 6 7.4150 -2.2061 1.7055 17 6 8.1256 -3.1107 1.1118 18 6 7.5910 -4.0559 0.0691 19 6 6.0621 -4.0829 0.1258 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8746 -0.6807 -0.8904 23 1 4.0231 -2.8124 -2.0511 24 1 3.9015 -4.2660 -1.2524 25 1 5.7612 -0.9070 1.3870 26 1 5.3709 -2.4061 2.2585 27 1 7.9033 -1.5766 2.4347 28 1 9.1679 -3.1940 1.3822 29 1 7.9772 -5.0587 0.2515 30 1 7.9101 -3.7221 -0.9183 31 1 5.7380 -4.5873 1.0362 32 1 5.6724 -4.6114 -0.7443 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218398.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:45 Heat of formation + Delta-G solvation = -27.764831 kcal Electronic energy + Delta-G solvation = -12475.221988 eV Core-core repulsion = 10433.980097 eV Total energy + Delta-G solvation = -2041.241891 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07192 -36.55978 -34.48386 -31.94400 -31.04397 -30.46402 -25.88307 -24.21270 -22.76637 -21.07096 -18.87760 -18.76363 -16.98302 -16.73198 -16.07411 -15.38862 -15.06671 -14.60185 -14.42022 -14.04431 -13.84246 -13.49562 -13.32163 -13.00883 -12.69298 -12.23943 -11.98243 -11.79997 -11.54787 -11.27222 -11.11364 -10.92421 -10.69006 -9.84717 -9.20564 -8.18987 -6.18522 1.36024 1.37672 1.44587 1.48860 2.40770 3.14933 3.75512 3.83244 3.91175 4.00034 4.42993 4.46491 4.47964 4.54040 4.63309 4.75066 4.90562 4.97049 5.05780 5.08986 5.16600 5.25618 5.35934 5.42501 5.64594 5.74147 5.82473 6.10070 6.40591 6.60529 6.87558 6.92538 7.42500 8.98704 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.009767 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.345931 B = 2866.032982 C = 3249.481717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.006 4.006 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.496 4.496 8 H 0.032 0.968 9 C -0.004 4.004 10 C 0.119 3.881 11 H 0.053 0.947 12 N -0.842 5.842 13 C -0.112 4.112 14 H 0.064 0.936 15 C -0.089 4.089 16 C -0.164 4.164 17 C -0.160 4.160 18 C -0.087 4.087 19 C -0.114 4.114 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.010 0.990 23 H 0.338 0.662 24 H 0.340 0.660 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.143 -5.767 0.835 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.201 4.201 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.170 1.170 7 C -0.535 4.535 8 H 0.051 0.949 9 C -0.042 4.042 10 C 0.007 3.993 11 H 0.071 0.929 12 N -0.372 5.372 13 C -0.133 4.133 14 H 0.083 0.917 15 C -0.126 4.126 16 C -0.182 4.182 17 C -0.178 4.178 18 C -0.124 4.124 19 C -0.152 4.152 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.029 0.971 23 H 0.151 0.849 24 H 0.154 0.846 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.245 -5.496 1.045 18.130 hybrid contribution 0.602 0.765 -0.059 0.976 sum 17.847 -4.730 0.986 18.489 Atomic orbital electron populations 1.70091 1.08247 1.27556 1.54263 1.26007 0.95580 1.03237 0.95232 0.85709 0.79520 0.78830 0.78830 1.19688 1.21365 1.16994 1.21373 0.91914 0.92694 1.47496 0.94930 1.19609 0.94233 0.94257 0.96066 1.21201 0.91134 0.95039 0.91889 0.92921 1.58659 1.68400 1.06187 1.03943 1.21984 0.96249 0.97199 0.97832 0.91711 1.20471 0.94274 1.00559 0.97313 1.22167 0.95451 0.99500 1.01062 1.22351 1.00063 0.97005 0.98357 1.20555 0.94357 0.99316 0.98190 1.21659 0.96112 0.95316 1.02104 0.92987 0.95658 0.97139 0.84907 0.84609 0.92045 0.91507 0.87192 0.86401 0.89478 0.90515 0.92260 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.52 13.96 21.45 0.30 -62.22 16 2 C -0.01 -0.35 5.47 84.65 0.46 0.11 16 3 Si 0.95 45.76 27.47 68.60 1.88 47.64 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.50 -29.45 9.39 25.60 0.24 -29.21 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C 0.00 -0.19 3.50 29.85 0.10 -0.09 16 10 C 0.12 4.57 2.31 44.92 0.10 4.67 16 11 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 12 N -0.84 -30.52 8.84 -168.66 -1.49 -32.01 16 13 C -0.11 -3.32 1.98 -10.65 -0.02 -3.34 16 14 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 15 C -0.09 -2.60 4.79 29.66 0.14 -2.46 16 16 C -0.16 -3.93 9.80 27.04 0.27 -3.66 16 17 C -0.16 -3.31 9.82 27.19 0.27 -3.04 16 18 C -0.09 -1.69 6.16 29.81 0.18 -1.50 16 19 C -0.11 -2.69 5.12 30.73 0.16 -2.54 16 20 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 21 H 0.03 1.17 5.52 -2.39 -0.01 1.16 16 22 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 23 H 0.34 11.39 9.00 -89.70 -0.81 10.59 16 24 H 0.34 10.04 7.26 -89.70 -0.65 9.39 16 25 H 0.06 1.96 6.95 -2.39 -0.02 1.94 16 26 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 27 H 0.11 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.07 1.54 6.46 -2.39 -0.02 1.52 16 Total: -1.00 -68.22 253.31 2.18 -66.03 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.41 Total: 21.63 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 1.91 Total: -41.07 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -1.19 Total: -94.23 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -68.22 2.18 -66.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218398.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.268 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds