Wall clock time and date at job start Mon Mar 30 2020 01:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 6 6 C 1.35301 * 127.04343 * 0.02679 * 5 2 1 7 7 N 1.31318 * 107.83951 * 179.97438 * 6 5 2 8 8 N 1.28563 * 110.21007 * 359.97438 * 7 6 5 9 9 C 1.33025 * 109.35361 * 359.74863 * 8 7 6 10 10 C 1.40125 * 126.65815 * 180.25639 * 9 8 7 11 11 H 1.08004 * 120.00298 * 180.16609 * 10 9 8 12 12 C 1.40239 * 119.99872 * 0.16804 * 10 9 8 13 13 N 1.30691 * 120.00034 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00196 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47222 * 59.99645 * 14 12 10 16 16 H 1.48502 * 109.47242 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47043 * 299.99545 * 14 12 10 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 27 27 H 1.07994 * 126.07893 * 359.97438 * 6 5 2 28 28 H 0.96998 * 119.99794 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 2.0184 -0.6907 -1.1961 6 6 1.2720 -1.2545 -2.1736 7 7 2.0926 -1.7669 -3.0616 8 7 3.3121 -1.5630 -2.7090 9 6 3.3326 -0.8932 -1.5599 10 6 4.4695 -0.4775 -0.8540 11 1 4.3609 0.0609 0.0759 12 6 5.7483 -0.7604 -1.3552 13 7 5.8798 -1.4123 -2.4803 14 14 7.2640 -0.2069 -0.4140 15 1 7.2624 -0.8265 0.9355 16 1 8.4840 -0.6265 -1.1494 17 1 7.2506 1.2720 -0.2797 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 -1.7488 1.2493 25 1 3.1300 -0.7207 1.2495 26 1 1.6766 -0.2073 2.1393 27 1 0.1931 -1.2789 -2.2160 28 1 6.7643 -1.6083 -2.8268 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239223.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:35 Heat of formation + Delta-G solvation = 61.611697 kcal Electronic energy + Delta-G solvation = -12695.380519 eV Core-core repulsion = 10554.473942 eV Total energy + Delta-G solvation = -2140.906577 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77310 -36.39913 -33.53125 -30.29812 -29.34677 -26.88027 -26.87317 -25.50150 -21.59537 -20.18855 -18.79632 -17.12844 -15.46103 -14.93251 -14.49226 -13.81804 -13.34637 -13.14457 -12.74393 -12.25015 -11.95885 -11.85941 -11.38274 -11.36574 -11.19244 -10.92475 -10.75815 -10.35375 -10.10342 -9.36983 -9.35819 -8.45498 -8.15044 -7.53254 -6.49717 -4.45184 3.02596 3.11782 3.13408 3.67115 3.90802 4.13337 4.66676 5.10974 5.25410 5.41031 5.54616 5.76191 5.88319 5.90920 6.04137 6.09543 6.27419 6.29424 6.30847 6.60898 6.74375 7.12568 7.15978 7.43834 7.79083 8.33539 8.35518 8.88610 9.10084 10.43769 10.94557 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.038988 B = 0.015201 C = 0.011819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.004477 B = 1841.499221 C = 2368.448487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.177 3.823 3 C -0.160 4.160 4 C -0.159 4.159 5 N -0.515 5.515 6 C 0.039 3.961 7 N -0.313 5.313 8 N -0.346 5.346 9 C 0.339 3.661 10 C -0.455 4.455 11 H 0.085 0.915 12 C 0.079 3.921 13 N -0.742 5.742 14 Si 0.912 3.088 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.266 1.266 18 H 0.060 0.940 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.175 0.825 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 4.705 8.142 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.090 3.910 3 C -0.218 4.218 4 C -0.217 4.217 5 N -0.216 5.216 6 C -0.246 4.246 7 N -0.154 5.154 8 N -0.192 5.192 9 C 0.094 3.906 10 C -0.495 4.495 11 H 0.103 0.897 12 C -0.146 4.146 13 N -0.366 5.366 14 Si 0.736 3.264 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.191 1.191 18 H 0.079 0.921 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.192 0.808 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.285 3.849 6.673 8.815 hybrid contribution 0.076 0.945 1.622 1.879 sum -4.209 4.794 8.295 10.465 Atomic orbital electron populations 1.22070 0.94057 1.02393 1.02237 1.20237 0.93521 0.92343 0.84894 1.22222 1.03948 0.94467 1.01147 1.22213 1.03898 1.00013 0.95609 1.46350 1.07285 1.48473 1.19510 1.25123 0.98318 1.09163 0.92009 1.74033 0.98813 1.18681 1.23863 1.75584 1.07791 1.23661 1.12137 1.21588 0.82267 0.94343 0.92425 1.18178 0.87730 1.36125 1.07504 0.89740 1.25779 1.00075 0.93950 0.94749 1.69961 1.24802 1.26201 1.15657 0.86334 0.80218 0.79766 0.80101 1.19117 1.20214 1.19113 0.92053 0.92051 0.91547 0.92288 0.90105 0.92735 0.92737 0.90155 0.92280 0.80800 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.40 37.16 0.27 -1.85 15 2 C 0.18 3.16 1.06 -131.82 -0.14 3.03 15 3 C -0.16 -2.68 8.50 37.16 0.32 -2.36 15 4 C -0.16 -2.67 8.50 37.16 0.32 -2.35 15 5 N -0.51 -12.05 2.64 -103.58 -0.27 -12.32 15 6 C 0.04 0.94 11.65 -89.45 -1.04 -0.11 15 7 N -0.31 -8.94 12.21 29.79 0.36 -8.58 15 8 N -0.35 -10.69 10.53 31.22 0.33 -10.37 15 9 C 0.34 9.44 7.11 -155.21 -1.10 8.33 15 10 C -0.46 -12.01 7.59 -38.12 -0.29 -12.30 15 11 H 0.08 2.01 4.68 -52.48 -0.25 1.76 15 12 C 0.08 2.06 5.50 -17.29 -0.10 1.96 15 13 N -0.74 -20.93 11.95 55.56 0.66 -20.27 15 14 Si 0.91 18.84 29.56 -169.99 -5.03 13.82 15 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 18 H 0.06 0.86 7.92 -51.93 -0.41 0.45 15 19 H 0.06 0.86 7.91 -51.93 -0.41 0.45 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.08 1.52 5.66 -51.93 -0.29 1.23 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.08 1.51 5.73 -51.93 -0.30 1.21 15 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.18 3.39 7.29 -52.49 -0.38 3.01 15 28 H 0.28 7.10 8.29 -40.82 -0.34 6.76 15 LS Contribution 233.72 15.07 3.52 3.52 Total: -1.00 -32.60 233.72 -5.47 -38.07 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.29 Total: 1.78 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.76 Total: -5.66 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 1.08 Total: -51.54 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.60 -5.47 -38.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239223.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.685 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds