Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48505 * 109.46886 * 239.99784 * 3 2 1 5 5 H 1.48494 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46835 * 120.00407 * 3 2 1 7 7 C 1.37882 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00162 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.69380 * 299.44000 * 9 7 2 11 11 C 1.55137 * 109.69636 * 59.99544 * 9 7 2 12 12 C 1.52294 * 110.63052 * 178.00419 * 11 9 7 13 13 C 1.52822 * 109.74384 * 262.12561 * 12 11 9 14 14 N 1.45489 * 112.52103 * 67.22953 * 13 12 11 15 15 C 1.47196 * 110.15235 * 60.68307 * 14 13 12 16 16 C 1.53679 * 107.00510 * 261.94475 * 15 14 13 17 17 C 1.52178 * 105.49462 * 352.67870 * 16 15 14 18 18 H 1.09000 * 108.69330 * 232.66513 * 17 16 15 19 19 C 1.49282 * 110.49883 * 300.45630 * 14 13 12 20 20 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.24215 * 57.71247 * 11 9 7 22 22 H 1.08989 * 109.24849 * 298.30370 * 11 9 7 23 23 H 1.09000 * 109.42288 * 142.03925 * 12 11 9 24 24 H 1.09003 * 109.38196 * 22.18216 * 12 11 9 25 25 H 1.09002 * 108.87444 * 306.44728 * 13 12 11 26 26 H 1.08999 * 108.79628 * 187.95981 * 13 12 11 27 27 H 1.09002 * 109.92758 * 142.61071 * 15 14 13 28 28 H 1.08998 * 110.10524 * 21.38113 * 15 14 13 29 29 H 1.09002 * 110.25686 * 111.70892 * 16 15 14 30 30 H 1.08996 * 110.25862 * 233.64727 * 16 15 14 31 31 H 1.09002 * 110.65696 * 210.46450 * 19 14 13 32 32 H 1.08995 * 110.66537 * 333.58418 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6300 -2.5649 0.8941 11 6 0.3574 -2.5871 -1.2647 12 6 -0.3772 -3.9203 -1.3112 13 6 0.3725 -4.8914 -2.2225 14 7 1.6658 -5.2787 -1.6801 15 6 1.4906 -5.9529 -0.3834 16 6 1.7400 -4.9000 0.7079 17 6 2.2407 -3.6645 -0.0260 18 1 3.1767 -3.3424 0.4304 19 6 2.5315 -4.0784 -1.4848 20 1 -0.4850 0.8401 0.0004 21 1 0.9818 -2.4898 -2.1529 22 1 -0.3706 -1.7762 -1.2474 23 1 -1.3849 -3.7656 -1.6970 24 1 -0.4341 -4.3373 -0.3057 25 1 0.5245 -4.4185 -3.1927 26 1 -0.2352 -5.7860 -2.3581 27 1 2.2106 -6.7656 -0.2870 28 1 0.4765 -6.3433 -0.2981 29 1 0.8126 -4.6759 1.2350 30 1 2.4956 -5.2547 1.4088 31 1 3.5829 -4.3385 -1.6074 32 1 2.2479 -3.2832 -2.1742 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = -0.346890 kcal Electronic energy + Delta-G solvation = -13240.522930 eV Core-core repulsion = 11200.469971 eV Total energy + Delta-G solvation = -2040.052959 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.75688 -33.93169 -32.45105 -31.24092 -28.66624 -26.18231 -24.76191 -22.68377 -20.60395 -19.83235 -17.99210 -16.44726 -15.52535 -14.69703 -14.59182 -14.03618 -13.02416 -12.81742 -12.61882 -12.15022 -11.45655 -11.38075 -11.25001 -10.92622 -10.77898 -10.52677 -10.38813 -10.24082 -10.09338 -9.73197 -9.28885 -8.84306 -8.69345 -8.29799 -7.71029 -5.98699 -4.04460 3.31362 3.36191 3.38820 4.43363 4.66610 5.26937 5.34169 5.45449 5.66240 5.82858 5.85506 6.07940 6.11354 6.15655 6.30535 6.41471 6.45950 6.49087 6.64149 6.79756 6.86624 6.93906 7.12510 7.28227 7.42952 7.59564 7.74500 7.75497 7.99673 8.13036 8.47073 8.98871 9.60087 11.07212 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056085 B = 0.012017 C = 0.011222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.119412 B = 2329.469339 C = 2494.394654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.063 3.937 10 H 0.024 0.976 11 C -0.119 4.119 12 C -0.154 4.154 13 C 0.051 3.949 14 N -0.527 5.527 15 C 0.045 3.955 16 C -0.138 4.138 17 C -0.111 4.111 18 H 0.057 0.943 19 C 0.043 3.957 20 H 0.260 0.740 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -7.678 -1.731 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.045 3.955 10 H 0.042 0.958 11 C -0.157 4.157 12 C -0.193 4.193 13 C -0.078 4.078 14 N -0.249 5.249 15 C -0.084 4.084 16 C -0.177 4.177 17 C -0.131 4.131 18 H 0.076 0.924 19 C -0.083 4.083 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.123 -7.909 -2.117 8.264 hybrid contribution 0.016 1.536 0.658 1.671 sum 1.139 -6.373 -1.459 6.637 Atomic orbital electron populations 1.69888 1.05876 1.26418 1.50653 1.24976 0.94826 0.98995 0.95146 0.86705 0.79642 0.83331 0.78602 1.20281 1.21365 1.20348 1.21241 0.92731 0.90646 1.50483 0.92772 1.19077 0.91845 0.90741 0.93835 0.95793 1.22085 0.99749 0.94728 0.99088 1.22185 0.98902 0.98554 0.99622 1.22004 0.90125 0.97550 0.98111 1.63939 1.12438 1.24422 1.24058 1.22651 1.00298 0.96989 0.88415 1.22401 1.00910 0.96166 0.98256 1.22133 1.00707 0.95658 0.94629 0.92411 1.23537 0.95979 0.91244 0.97561 0.93043 0.93922 0.89640 0.93453 0.92518 0.91772 0.92689 0.91647 0.92231 0.91741 0.92590 0.92085 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.36 55.43 0.63 -24.74 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.95 8.48 -34.44 -0.29 -14.24 16 8 H 0.05 1.46 7.50 -52.49 -0.39 1.07 16 9 C 0.06 1.56 1.86 -90.68 -0.17 1.39 16 10 H 0.02 0.65 7.60 -51.93 -0.39 0.26 16 11 C -0.12 -2.76 4.56 -25.96 -0.12 -2.88 16 12 C -0.15 -2.99 5.47 -27.18 -0.15 -3.14 16 13 C 0.05 0.89 5.09 -4.68 -0.02 0.87 16 14 N -0.53 -9.40 5.51 -232.26 -1.28 -10.67 16 15 C 0.05 0.74 6.22 -3.31 -0.02 0.72 16 16 C -0.14 -2.49 5.82 -26.80 -0.16 -2.64 16 17 C -0.11 -2.32 2.53 -90.35 -0.23 -2.55 16 18 H 0.06 1.25 7.57 -51.93 -0.39 0.85 16 19 C 0.04 0.84 6.44 -1.77 -0.01 0.83 16 20 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 21 H 0.04 0.99 5.24 -51.93 -0.27 0.72 16 22 H 0.09 2.26 6.17 -51.94 -0.32 1.94 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.12 5.22 -51.93 -0.27 0.85 16 25 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 26 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.92 7.29 -51.93 -0.38 0.54 16 29 H 0.06 1.20 6.63 -51.93 -0.34 0.86 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.92 5.01 -51.93 -0.26 1.66 16 LS Contribution 234.56 15.07 3.53 3.53 Total: -1.00 -27.58 234.56 -8.08 -35.66 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.68 Total: 0.02 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.26 Total: -20.04 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.65 Total: -35.41 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.58 -8.08 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.309 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds