Wall clock time and date at job start Mon Mar 30 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30503 * 125.64647 * 305.01993 * 3 2 1 5 5 C 1.34126 * 109.25440 * 179.97438 * 4 3 2 6 6 C 1.50709 * 125.98999 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46798 * 65.02607 * 6 5 4 8 8 N 1.46898 * 109.46967 * 185.02806 * 6 5 4 9 9 C 1.50702 * 109.46916 * 305.02810 * 6 5 4 10 10 H 1.08003 * 120.00042 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99598 * 179.97438 * 9 6 5 12 12 N 1.31509 * 120.00379 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99874 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47237 * 89.99686 * 13 11 9 15 15 H 1.48497 * 109.47040 * 210.00080 * 13 11 9 16 16 H 1.48500 * 109.46902 * 329.99860 * 13 11 9 17 17 C 1.34667 * 108.02201 * 0.02562 * 5 4 3 18 18 N 1.35042 * 125.65560 * 124.71668 * 3 2 1 19 19 H 0.97003 * 126.39267 * 359.97438 * 18 3 2 20 20 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 21 21 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 23 23 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 24 24 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 25 25 H 1.00903 * 110.99988 * 60.00521 * 8 6 5 26 26 H 1.00903 * 110.99514 * 183.95329 * 8 6 5 27 27 H 0.97000 * 120.00533 * 180.02562 * 12 11 9 28 28 H 1.08004 * 126.59027 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7122 2.3407 -0.8685 5 6 2.3454 3.4816 -0.5582 6 6 2.2459 4.7830 -1.3118 7 1 1.2282 5.1669 -1.2410 8 7 3.1786 5.7578 -0.7307 9 6 2.5966 4.5533 -2.7593 10 1 2.8643 3.5639 -3.0996 11 6 2.5747 5.6061 -3.6493 12 7 2.2482 6.8107 -3.2350 13 14 3.0087 5.3213 -5.4438 14 1 1.7788 4.9786 -6.2022 15 1 3.6112 6.5552 -6.0091 16 1 3.9811 4.2037 -5.5465 17 6 3.0867 3.2602 0.5441 18 7 2.8840 1.9546 0.9019 19 1 3.2795 1.4977 1.6606 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5137 0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 4.1296 5.4248 -0.7843 26 1 3.0850 6.6580 -1.1767 27 1 2.2324 7.5514 -3.8612 28 1 3.7160 3.9765 1.0513 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261274109.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:02 Heat of formation + Delta-G solvation = 42.982511 kcal Electronic energy + Delta-G solvation = -12082.226131 eV Core-core repulsion = 9940.511732 eV Total energy + Delta-G solvation = -2141.714399 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.24607 -34.77522 -33.25370 -31.77567 -30.82408 -27.47438 -25.87130 -23.53468 -22.34595 -19.80891 -18.92495 -17.08429 -16.27008 -14.83796 -14.52033 -13.94660 -13.69495 -13.62452 -13.10803 -12.52270 -11.98039 -11.90246 -11.34997 -11.10085 -10.95082 -10.78812 -10.74611 -9.94667 -9.74048 -9.02215 -8.99074 -8.47759 -7.40582 -7.09367 -5.93167 -4.04799 2.81726 3.34008 3.39892 3.44723 3.76110 4.06812 4.49872 4.90151 5.19066 5.30255 5.48046 5.66094 5.90187 5.94880 6.16670 6.28529 6.46495 6.54402 6.83235 7.02283 7.56184 7.84808 7.93968 8.10377 8.29335 8.76237 9.04871 9.15646 9.22137 9.64190 11.06069 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043303 B = 0.010297 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.445564 B = 2718.565461 C = 3117.839788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.028 4.028 3 C 0.177 3.823 4 N -0.471 5.471 5 C 0.056 3.944 6 C 0.281 3.719 7 H 0.049 0.951 8 N -0.851 5.851 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.901 5.901 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.072 4.072 18 N -0.580 5.580 19 H 0.406 0.594 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.310 0.690 26 H 0.358 0.642 27 H 0.263 0.737 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -9.851 7.519 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.086 4.086 4 N -0.192 5.192 5 C -0.073 4.073 6 C 0.170 3.830 7 H 0.067 0.933 8 N -0.381 5.381 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.542 5.542 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.202 4.202 18 N -0.185 5.185 19 H 0.241 0.759 20 H 0.089 0.911 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.174 0.826 27 H 0.073 0.927 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.082 -9.817 7.432 12.313 hybrid contribution 1.451 -0.120 -0.957 1.742 sum 1.533 -9.937 6.475 11.959 Atomic orbital electron populations 1.21665 0.93985 1.01113 1.03216 1.19774 0.96761 0.87874 1.02320 1.23196 0.97155 0.97554 0.90720 1.70079 1.24901 0.99712 1.24526 1.21423 0.96022 0.95475 0.94377 1.17201 0.94022 0.82687 0.89060 0.93337 1.59391 1.07845 1.08357 1.62463 1.21825 1.45384 0.94966 0.94113 0.92535 1.25013 0.94998 0.95209 0.98850 1.69737 1.49505 0.99814 1.35149 0.86516 0.78593 0.77330 0.85055 1.20624 1.21383 1.20108 1.22477 1.09490 0.85447 1.02820 1.43160 1.38748 1.11448 1.25142 0.75858 0.91064 0.92628 0.92985 0.91465 0.89983 0.88119 0.82567 0.92739 0.80941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.87 37.16 0.37 -1.43 15 2 C -0.03 -0.37 6.56 -27.88 -0.18 -0.55 15 3 C 0.18 3.21 7.43 -155.41 -1.16 2.06 15 4 N -0.47 -10.96 11.19 -7.07 -0.08 -11.04 15 5 C 0.06 1.36 6.24 -82.85 -0.52 0.84 15 6 C 0.28 7.56 3.26 -70.01 -0.23 7.33 15 7 H 0.05 1.46 8.14 -51.93 -0.42 1.04 15 8 N -0.85 -20.72 8.50 -6.65 -0.06 -20.77 15 9 C -0.52 -15.11 8.69 -34.44 -0.30 -15.41 15 10 H 0.06 1.70 7.74 -52.48 -0.41 1.30 15 11 C 0.06 1.70 5.38 -17.82 -0.10 1.61 15 12 N -0.90 -25.86 11.54 55.43 0.64 -25.22 15 13 Si 0.90 22.13 29.54 -169.99 -5.02 17.10 15 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 C -0.07 -1.42 11.16 -16.56 -0.18 -1.60 15 18 N -0.58 -9.42 6.15 -10.23 -0.06 -9.48 15 19 H 0.41 4.72 8.96 -40.82 -0.37 4.36 15 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.31 7.17 8.74 -39.29 -0.34 6.83 15 26 H 0.36 9.31 7.08 -39.29 -0.28 9.03 15 27 H 0.26 7.19 8.31 -40.82 -0.34 6.86 15 28 H 0.17 3.08 7.76 -52.48 -0.41 2.67 15 LS Contribution 244.27 15.07 3.68 3.68 Total: -1.00 -31.74 244.27 -6.67 -38.40 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -3.47 Total: 14.49 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.30 Total: -7.17 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: 0.44 Total: -66.51 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.74 -6.67 -38.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274109.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.387 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds