Wall clock time and date at job start Mon Mar 30 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30503 * 125.64647 * 305.01993 * 3 2 1 5 5 C 1.34126 * 109.25440 * 179.97438 * 4 3 2 6 6 C 1.50709 * 125.98999 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46798 * 65.02607 * 6 5 4 8 8 N 1.46898 * 109.46967 * 185.02806 * 6 5 4 9 9 C 1.50702 * 109.46916 * 305.02810 * 6 5 4 10 10 H 1.08003 * 120.00042 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99598 * 179.97438 * 9 6 5 12 12 N 1.31509 * 120.00379 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99874 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47237 * 89.99686 * 13 11 9 15 15 H 1.48497 * 109.47040 * 210.00080 * 13 11 9 16 16 H 1.48500 * 109.46902 * 329.99860 * 13 11 9 17 17 C 1.34667 * 108.02201 * 0.02562 * 5 4 3 18 18 N 1.35042 * 125.65560 * 124.71668 * 3 2 1 19 19 H 0.97003 * 126.39267 * 359.97438 * 18 3 2 20 20 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 21 21 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 23 23 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 24 24 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 25 25 H 1.00903 * 110.99988 * 60.00521 * 8 6 5 26 26 H 1.00903 * 110.99514 * 183.95329 * 8 6 5 27 27 H 0.97000 * 120.00533 * 180.02562 * 12 11 9 28 28 H 1.08004 * 126.59027 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7122 2.3407 -0.8685 5 6 2.3454 3.4816 -0.5582 6 6 2.2459 4.7830 -1.3118 7 1 1.2282 5.1669 -1.2410 8 7 3.1786 5.7578 -0.7307 9 6 2.5966 4.5533 -2.7593 10 1 2.8643 3.5639 -3.0996 11 6 2.5747 5.6061 -3.6493 12 7 2.2482 6.8107 -3.2350 13 14 3.0087 5.3213 -5.4438 14 1 1.7788 4.9786 -6.2022 15 1 3.6112 6.5552 -6.0091 16 1 3.9811 4.2037 -5.5465 17 6 3.0867 3.2602 0.5441 18 7 2.8840 1.9546 0.9019 19 1 3.2795 1.4977 1.6606 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5137 0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 4.1296 5.4248 -0.7843 26 1 3.0850 6.6580 -1.1767 27 1 2.2324 7.5514 -3.8612 28 1 3.7160 3.9765 1.0513 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274109.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:02 Heat of formation + Delta-G solvation = 18.855329 kcal Electronic energy + Delta-G solvation = -12083.272365 eV Core-core repulsion = 9940.511732 eV Total energy + Delta-G solvation = -2142.760632 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.77228 -36.74085 -34.49686 -33.54849 -32.69342 -29.02655 -27.96464 -24.91724 -24.10468 -21.22370 -20.62519 -18.73087 -18.33934 -16.59550 -16.23063 -15.55758 -15.18179 -15.10067 -14.55646 -14.48766 -13.73643 -13.24272 -13.02636 -12.79762 -12.76097 -12.37781 -11.97920 -11.94119 -11.82112 -10.78808 -10.62094 -10.49525 -9.22893 -8.96574 -8.07445 -6.30188 1.32852 1.37027 1.38923 1.49166 2.32713 2.44764 2.49555 3.08417 3.63762 4.17508 4.36188 4.45739 4.57998 4.72616 4.84156 4.99783 5.03122 5.21776 5.36279 5.43381 5.60867 5.70168 5.98974 6.18646 6.65077 6.83497 6.95759 7.14778 7.42268 7.53821 8.87628 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043303 B = 0.010297 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.445564 B = 2718.565461 C = 3117.839788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C 0.189 3.811 4 N -0.527 5.527 5 C 0.004 3.996 6 C 0.287 3.713 7 H -0.001 1.001 8 N -0.833 5.833 9 C -0.543 4.543 10 H 0.036 0.964 11 C 0.018 3.982 12 N -0.919 5.919 13 Si 0.960 3.040 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.276 1.276 17 C -0.051 4.051 18 N -0.558 5.558 19 H 0.432 0.568 20 H 0.037 0.963 21 H 0.090 0.910 22 H 0.048 0.952 23 H 0.112 0.888 24 H 0.088 0.912 25 H 0.319 0.681 26 H 0.348 0.652 27 H 0.267 0.733 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -11.567 8.298 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.076 4.076 4 N -0.249 5.249 5 C -0.124 4.124 6 C 0.175 3.825 7 H 0.017 0.983 8 N -0.361 5.361 9 C -0.583 4.583 10 H 0.055 0.945 11 C -0.182 4.182 12 N -0.560 5.560 13 Si 0.786 3.214 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.201 1.201 17 C -0.184 4.184 18 N -0.165 5.165 19 H 0.273 0.727 20 H 0.056 0.944 21 H 0.108 0.892 22 H 0.067 0.933 23 H 0.130 0.870 24 H 0.107 0.893 25 H 0.129 0.871 26 H 0.163 0.837 27 H 0.076 0.924 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.041 -11.552 8.250 14.234 hybrid contribution 1.127 0.359 -1.140 1.643 sum 2.167 -11.193 7.111 13.437 Atomic orbital electron populations 1.21635 0.93796 1.02799 1.01431 1.20061 0.96834 0.84939 1.04815 1.24057 0.95707 0.98588 0.89237 1.69959 1.26872 1.00657 1.27375 1.21101 0.99493 0.95107 0.96730 1.16868 0.91777 0.84642 0.89178 0.98291 1.59310 1.08013 1.07303 1.61503 1.21944 1.46341 0.94226 0.95793 0.94538 1.25738 0.94685 0.94940 1.02792 1.69829 1.49376 1.00305 1.36476 0.85532 0.78215 0.77571 0.80067 1.20531 1.19943 1.20081 1.22531 1.07855 0.86964 1.01071 1.43024 1.37821 1.10161 1.25456 0.72678 0.94397 0.89166 0.93259 0.86959 0.89349 0.87146 0.83749 0.92354 0.79060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.87 71.98 0.71 -2.51 15 2 C -0.03 -0.64 6.56 29.85 0.20 -0.44 15 3 C 0.19 6.53 7.43 138.13 1.03 7.56 15 4 N -0.53 -24.83 11.19 -176.28 -1.97 -26.80 15 5 C 0.00 0.20 6.24 41.39 0.26 0.46 15 6 C 0.29 16.02 3.26 43.43 0.14 16.16 15 7 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 8 N -0.83 -41.34 8.50 -174.94 -1.49 -42.83 15 9 C -0.54 -32.41 8.69 25.60 0.22 -32.19 15 10 H 0.04 2.27 7.74 -2.91 -0.02 2.25 15 11 C 0.02 1.01 5.38 84.65 0.46 1.47 15 12 N -0.92 -53.57 11.54 21.45 0.25 -53.33 15 13 Si 0.96 45.85 29.54 68.60 2.03 47.87 15 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 15 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 16 H -0.28 -13.06 7.11 99.48 0.71 -12.36 15 17 C -0.05 -1.97 11.16 83.09 0.93 -1.04 15 18 N -0.56 -16.59 6.15 -186.27 -1.15 -17.74 15 19 H 0.43 8.24 8.96 -92.71 -0.83 7.41 15 20 H 0.04 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.11 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.32 14.81 8.74 -89.69 -0.78 14.03 15 26 H 0.35 18.51 7.08 -89.69 -0.63 17.87 15 27 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 28 H 0.19 6.45 7.76 -2.91 -0.02 6.42 15 Total: -1.00 -71.40 244.27 0.55 -70.86 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -1.06 Total: 32.51 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 3.94 Total: -10.54 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -4.36 Total: -140.70 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -71.40 0.55 -70.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274109.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.711 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds