Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.47480 * 2 1 4 4 N 1.30498 * 125.64976 * 304.98011 * 3 2 1 5 5 C 1.34127 * 109.25233 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.98668 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47303 * 185.02082 * 6 5 4 8 8 N 1.46895 * 109.47655 * 65.01510 * 6 5 4 9 9 C 1.50704 * 109.46859 * 305.01826 * 6 5 4 10 10 H 1.08006 * 120.00196 * 34.91633 * 9 6 5 11 11 C 1.37873 * 119.99855 * 214.92152 * 9 6 5 12 12 N 1.31525 * 119.99795 * 184.78306 * 11 9 6 13 13 Si 1.86799 * 120.00475 * 4.77588 * 11 9 6 14 14 H 1.48506 * 109.46844 * 84.87401 * 13 11 9 15 15 H 1.48496 * 109.47485 * 204.87596 * 13 11 9 16 16 H 1.48501 * 109.46912 * 324.88150 * 13 11 9 17 17 C 1.34667 * 108.02726 * 0.25697 * 5 4 3 18 18 N 1.35044 * 125.64868 * 124.99324 * 3 2 1 19 19 H 0.97004 * 126.39614 * 0.02724 * 18 3 2 20 20 H 1.08996 * 109.47347 * 299.99955 * 1 2 3 21 21 H 1.09004 * 109.47116 * 59.99731 * 1 2 3 22 22 H 1.08995 * 109.47555 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47567 * 240.00128 * 2 1 3 24 24 H 1.09004 * 109.47116 * 120.00269 * 2 1 3 25 25 H 1.00897 * 111.00570 * 174.47893 * 8 6 5 26 26 H 1.00908 * 111.00365 * 298.43860 * 8 6 5 27 27 H 0.96998 * 119.99585 * 179.97438 * 12 11 9 28 28 H 1.07999 * 126.59554 * 179.70293 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7127 2.3406 -0.8689 5 6 2.3468 3.4811 -0.5589 6 6 2.2474 4.7825 -1.3124 7 1 2.9399 5.5056 -0.8817 8 7 0.8761 5.3005 -1.2163 9 6 2.5972 4.5526 -2.7602 10 1 2.3248 3.6246 -3.2408 11 6 3.2650 5.5271 -3.4711 12 7 3.4872 5.3667 -4.7575 13 14 3.8540 7.0751 -2.6074 14 1 5.1773 6.8206 -1.9832 15 1 3.9765 8.1771 -3.5953 16 1 2.8767 7.4583 -1.5570 17 6 3.0919 3.2583 0.5405 18 7 2.8880 1.9530 0.8990 19 1 3.2876 1.4946 1.6547 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 0.8048 6.2151 -1.6363 26 1 0.2173 4.6592 -1.6322 27 1 3.9567 6.0524 -5.2576 28 1 3.7265 3.9726 1.0439 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261274111.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = 45.126515 kcal Electronic energy + Delta-G solvation = -12110.547391 eV Core-core repulsion = 9968.925963 eV Total energy + Delta-G solvation = -2141.621428 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.33653 -34.82079 -33.28920 -31.90924 -31.12121 -28.05257 -25.95836 -23.65233 -21.97796 -20.06419 -19.10284 -17.07067 -16.66234 -14.93784 -14.65968 -14.21892 -13.88746 -13.56007 -13.12789 -12.60773 -12.35187 -11.97884 -11.57692 -11.29049 -11.01670 -10.94119 -10.75312 -9.90143 -9.43142 -9.18373 -9.10915 -8.55672 -7.67448 -7.19543 -6.05424 -4.05456 2.71244 3.28456 3.37160 3.38823 3.67009 3.97856 4.41216 4.86091 5.16368 5.30006 5.46072 5.62166 5.74921 5.92698 6.04607 6.14266 6.32124 6.42263 6.48603 6.81289 7.00326 7.57670 7.66996 8.04106 8.43843 8.56282 8.77997 8.96999 9.10629 9.57084 11.07993 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.051600 B = 0.010238 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.508977 B = 2734.365316 C = 2864.284346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C 0.185 3.815 4 N -0.465 5.465 5 C 0.075 3.925 6 C 0.250 3.750 7 H 0.047 0.953 8 N -0.850 5.850 9 C -0.530 4.530 10 H 0.079 0.921 11 C 0.070 3.930 12 N -0.897 5.897 13 Si 0.873 3.127 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.261 1.261 17 C -0.087 4.087 18 N -0.576 5.576 19 H 0.407 0.593 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.325 0.675 26 H 0.333 0.667 27 H 0.263 0.737 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 -6.987 11.578 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.078 4.078 4 N -0.185 5.185 5 C -0.055 4.055 6 C 0.140 3.860 7 H 0.065 0.935 8 N -0.378 5.378 9 C -0.570 4.570 10 H 0.097 0.903 11 C -0.132 4.132 12 N -0.535 5.535 13 Si 0.700 3.300 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.186 1.186 17 C -0.219 4.219 18 N -0.181 5.181 19 H 0.243 0.757 20 H 0.070 0.930 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.073 0.927 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.050 -6.988 11.517 13.626 hybrid contribution 1.458 0.772 0.305 1.678 sum -0.592 -6.217 11.822 13.370 Atomic orbital electron populations 1.21653 0.93876 1.01178 1.03205 1.19803 0.96842 0.87747 1.02478 1.23225 0.96633 0.97599 0.90354 1.70080 1.24855 0.99507 1.24087 1.21008 0.95804 0.95281 0.93427 1.17719 0.88361 0.86618 0.93301 0.93489 1.59507 1.07751 1.06599 1.63903 1.21730 1.37082 1.04454 0.93751 0.90256 1.25127 0.95309 0.98038 0.94732 1.69932 1.41630 1.34903 1.07038 0.86919 0.79944 0.83380 0.79770 1.20207 1.21511 1.18553 1.22374 1.10157 0.86413 1.02936 1.43070 1.38373 1.11158 1.25459 0.75682 0.92974 0.91048 0.92585 0.89791 0.91406 0.86417 0.85615 0.92719 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.87 37.15 0.37 -1.37 15 2 C -0.03 -0.38 6.56 -27.89 -0.18 -0.56 15 3 C 0.19 3.29 7.43 -155.42 -1.15 2.14 15 4 N -0.46 -10.45 11.19 -7.07 -0.08 -10.53 15 5 C 0.07 1.74 5.90 -82.85 -0.49 1.25 15 6 C 0.25 6.26 2.87 -70.02 -0.20 6.06 15 7 H 0.05 1.17 5.27 -51.93 -0.27 0.89 15 8 N -0.85 -19.64 9.20 -6.65 -0.06 -19.70 15 9 C -0.53 -15.42 9.10 -34.44 -0.31 -15.73 15 10 H 0.08 2.61 8.06 -52.48 -0.42 2.19 15 11 C 0.07 2.05 5.47 -17.82 -0.10 1.96 15 12 N -0.90 -27.83 13.96 55.43 0.77 -27.06 15 13 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 15 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 15 16 H -0.26 -6.08 6.82 56.52 0.39 -5.69 15 17 C -0.09 -1.67 11.92 -16.56 -0.20 -1.87 15 18 N -0.58 -9.10 6.15 -10.23 -0.06 -9.16 15 19 H 0.41 4.55 8.96 -40.82 -0.37 4.19 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 25 H 0.32 7.29 9.07 -39.29 -0.36 6.93 15 26 H 0.33 7.75 8.98 -39.29 -0.35 7.39 15 27 H 0.26 7.63 8.31 -40.82 -0.34 7.30 15 28 H 0.17 2.70 8.06 -52.49 -0.42 2.28 15 LS Contribution 245.07 15.07 3.69 3.69 Total: -1.00 -33.66 245.07 -6.05 -39.72 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -3.46 Total: 14.39 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.27 Total: -8.14 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: 0.57 Total: -66.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.66 -6.05 -39.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274111.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.842 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds