Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.47480 * 2 1 4 4 N 1.30498 * 125.64976 * 304.98011 * 3 2 1 5 5 C 1.34127 * 109.25233 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.98668 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47303 * 185.02082 * 6 5 4 8 8 N 1.46895 * 109.47655 * 65.01510 * 6 5 4 9 9 C 1.50704 * 109.46859 * 305.01826 * 6 5 4 10 10 H 1.08006 * 120.00196 * 34.91633 * 9 6 5 11 11 C 1.37873 * 119.99855 * 214.92152 * 9 6 5 12 12 N 1.31525 * 119.99795 * 184.78306 * 11 9 6 13 13 Si 1.86799 * 120.00475 * 4.77588 * 11 9 6 14 14 H 1.48506 * 109.46844 * 84.87401 * 13 11 9 15 15 H 1.48496 * 109.47485 * 204.87596 * 13 11 9 16 16 H 1.48501 * 109.46912 * 324.88150 * 13 11 9 17 17 C 1.34667 * 108.02726 * 0.25697 * 5 4 3 18 18 N 1.35044 * 125.64868 * 124.99324 * 3 2 1 19 19 H 0.97004 * 126.39614 * 0.02724 * 18 3 2 20 20 H 1.08996 * 109.47347 * 299.99955 * 1 2 3 21 21 H 1.09004 * 109.47116 * 59.99731 * 1 2 3 22 22 H 1.08995 * 109.47555 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47567 * 240.00128 * 2 1 3 24 24 H 1.09004 * 109.47116 * 120.00269 * 2 1 3 25 25 H 1.00897 * 111.00570 * 174.47893 * 8 6 5 26 26 H 1.00908 * 111.00365 * 298.43860 * 8 6 5 27 27 H 0.96998 * 119.99585 * 179.97438 * 12 11 9 28 28 H 1.07999 * 126.59554 * 179.70293 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7127 2.3406 -0.8689 5 6 2.3468 3.4811 -0.5589 6 6 2.2474 4.7825 -1.3124 7 1 2.9399 5.5056 -0.8817 8 7 0.8761 5.3005 -1.2163 9 6 2.5972 4.5526 -2.7602 10 1 2.3248 3.6246 -3.2408 11 6 3.2650 5.5271 -3.4711 12 7 3.4872 5.3667 -4.7575 13 14 3.8540 7.0751 -2.6074 14 1 5.1773 6.8206 -1.9832 15 1 3.9765 8.1771 -3.5953 16 1 2.8767 7.4583 -1.5570 17 6 3.0919 3.2583 0.5405 18 7 2.8880 1.9530 0.8990 19 1 3.2876 1.4946 1.6547 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 0.8048 6.2151 -1.6363 26 1 0.2173 4.6592 -1.6322 27 1 3.9567 6.0524 -5.2576 28 1 3.7265 3.9726 1.0439 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274111.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = 17.853851 kcal Electronic energy + Delta-G solvation = -12111.730023 eV Core-core repulsion = 9968.925963 eV Total energy + Delta-G solvation = -2142.804059 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.78569 -36.69111 -34.49534 -33.89045 -32.78016 -29.56399 -27.97763 -24.96181 -23.68908 -21.46425 -20.69740 -19.10141 -18.23109 -16.73074 -16.16130 -16.04877 -15.14664 -14.88437 -14.71050 -14.52590 -14.07930 -13.45793 -13.07119 -12.93094 -12.68328 -12.39200 -11.99580 -11.79752 -11.57555 -10.86277 -10.62215 -10.61724 -9.39740 -8.92722 -8.29515 -6.35801 1.28950 1.36122 1.38439 1.49744 2.33438 2.39946 2.41934 3.08397 3.64544 4.15183 4.27711 4.40031 4.47289 4.54812 4.70437 4.86159 5.02360 5.09833 5.25808 5.31670 5.45504 5.57280 5.99171 6.27482 6.58846 6.71853 6.81058 6.89750 7.31330 7.48775 8.88115 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.051600 B = 0.010238 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.508977 B = 2734.365316 C = 2864.284346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C 0.189 3.811 4 N -0.519 5.519 5 C 0.018 3.982 6 C 0.255 3.745 7 H 0.055 0.945 8 N -0.837 5.837 9 C -0.534 4.534 10 H 0.020 0.980 11 C 0.010 3.990 12 N -0.950 5.950 13 Si 0.951 3.049 14 H -0.264 1.264 15 H -0.287 1.287 16 H -0.238 1.238 17 C -0.071 4.071 18 N -0.555 5.555 19 H 0.433 0.567 20 H 0.051 0.949 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.328 0.672 26 H 0.329 0.671 27 H 0.266 0.734 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 -7.075 14.464 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.075 4.075 4 N -0.240 5.240 5 C -0.111 4.111 6 C 0.145 3.855 7 H 0.073 0.927 8 N -0.363 5.363 9 C -0.574 4.574 10 H 0.039 0.961 11 C -0.188 4.188 12 N -0.590 5.590 13 Si 0.774 3.226 14 H -0.189 1.189 15 H -0.213 1.213 16 H -0.162 1.162 17 C -0.205 4.205 18 N -0.161 5.161 19 H 0.274 0.726 20 H 0.070 0.930 21 H 0.056 0.944 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.130 0.870 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.075 0.925 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.378 -7.105 14.448 16.160 hybrid contribution 1.196 0.647 -0.610 1.490 sum -0.182 -6.458 13.839 15.273 Atomic orbital electron populations 1.21610 0.93580 1.02736 1.01533 1.20056 0.97031 0.85118 1.04612 1.24021 0.95666 0.98615 0.89236 1.69972 1.26847 1.00566 1.26633 1.20917 0.99134 0.95149 0.95939 1.17567 0.88778 0.88382 0.90807 0.92737 1.59488 1.06918 1.06544 1.63375 1.21855 1.37100 1.02200 0.96256 0.96145 1.26101 0.95250 1.02147 0.95262 1.70108 1.43084 1.36644 1.09138 0.85680 0.80078 0.77997 0.78871 1.18906 1.21328 1.16160 1.22675 1.08471 0.87890 1.01424 1.42969 1.37388 1.10079 1.25672 0.72617 0.92991 0.94361 0.89383 0.89778 0.87003 0.86136 0.86083 0.92534 0.78666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.87 71.98 0.71 -2.42 15 2 C -0.03 -0.68 6.56 29.85 0.20 -0.49 15 3 C 0.19 6.42 7.43 138.13 1.03 7.45 15 4 N -0.52 -23.60 11.19 -176.28 -1.97 -25.57 15 5 C 0.02 0.82 5.90 41.39 0.24 1.06 15 6 C 0.26 12.76 2.87 43.43 0.12 12.89 15 7 H 0.05 2.61 5.27 -2.39 -0.01 2.59 15 8 N -0.84 -38.58 9.20 -174.96 -1.61 -40.19 15 9 C -0.53 -32.16 9.10 25.60 0.23 -31.92 15 10 H 0.02 1.42 8.06 -2.91 -0.02 1.40 15 11 C 0.01 0.60 5.47 84.65 0.46 1.06 15 12 N -0.95 -60.93 13.96 21.45 0.30 -60.63 15 13 Si 0.95 44.04 26.99 68.60 1.85 45.89 15 14 H -0.26 -11.68 7.11 99.48 0.71 -10.98 15 15 H -0.29 -13.14 7.11 99.48 0.71 -12.44 15 16 H -0.24 -10.08 6.82 99.48 0.68 -9.40 15 17 C -0.07 -2.55 11.92 83.09 0.99 -1.56 15 18 N -0.55 -15.83 6.15 -186.27 -1.15 -16.97 15 19 H 0.43 7.80 8.96 -92.71 -0.83 6.96 15 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.04 1.12 8.14 -2.38 -0.02 1.10 15 22 H 0.09 1.44 8.14 -2.39 -0.02 1.43 15 23 H 0.08 1.99 8.14 -2.38 -0.02 1.97 15 24 H 0.11 1.64 8.14 -2.38 -0.02 1.62 15 25 H 0.33 14.47 9.07 -89.70 -0.81 13.66 15 26 H 0.33 15.70 8.98 -89.69 -0.81 14.90 15 27 H 0.27 15.85 8.31 -92.71 -0.77 15.08 15 28 H 0.20 5.62 8.06 -2.91 -0.02 5.60 15 Total: -1.00 -76.87 245.07 0.13 -76.75 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -1.28 Total: 34.65 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 3.99 Total: -13.93 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -4.43 Total: -143.37 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.85 Total: 45.89 kcal Total: -76.87 0.13 -76.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274111.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.600 kcal (2) G-P(sol) polarization free energy of solvation -76.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds