Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47367 * 2 1 4 4 N 1.46498 * 109.47001 * 119.99539 * 2 1 3 5 5 C 1.37365 * 126.50197 * 300.32850 * 4 2 1 6 6 C 1.34681 * 106.97466 * 180.13503 * 5 4 2 7 7 N 1.34091 * 108.34147 * 359.58451 * 6 5 4 8 8 C 1.31365 * 109.29154 * 0.26555 * 7 6 5 9 9 N 1.38138 * 125.80186 * 179.97438 * 8 7 6 10 10 C 1.36923 * 120.00355 * 0.02562 * 9 8 7 11 11 H 1.08005 * 119.99823 * 0.02562 * 10 9 8 12 12 C 1.38724 * 120.00266 * 180.02562 * 10 9 8 13 13 N 1.31613 * 119.99798 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00064 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 90.00390 * 14 12 10 16 16 H 1.48510 * 109.47236 * 209.99968 * 14 12 10 17 17 H 1.48493 * 109.47325 * 330.00055 * 14 12 10 18 18 H 1.09006 * 109.46885 * 60.00579 * 1 2 3 19 19 H 1.08993 * 109.47386 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47351 * 300.00537 * 1 2 3 21 21 H 1.09002 * 109.47351 * 239.99463 * 2 1 3 22 22 H 1.09001 * 109.47925 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.47101 * 299.99291 * 3 2 1 24 24 H 1.09002 * 109.47323 * 59.99445 * 3 2 1 25 25 H 1.08001 * 126.51161 * 0.02562 * 5 4 2 26 26 H 1.08002 * 125.83394 * 179.85278 * 6 5 4 27 27 H 0.97001 * 119.99836 * 180.02562 * 9 8 7 28 28 H 0.97004 * 119.99821 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.7649 -0.3431 2.5008 6 6 2.4048 -1.2383 3.2774 7 7 3.0278 -2.1189 2.4809 8 6 2.8044 -1.8023 1.2257 9 7 3.2856 -2.4813 0.1231 10 6 4.0701 -3.5909 0.2909 11 1 4.3124 -3.9355 1.2855 12 6 4.5538 -4.2724 -0.8163 13 7 4.2589 -3.8522 -2.0282 14 14 5.6234 -5.7866 -0.5873 15 1 4.7636 -6.9959 -0.5287 16 1 6.5659 -5.9042 -1.7290 17 1 6.3913 -5.6634 0.6777 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 3.1300 1.4426 -0.0005 23 1 1.6768 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.1677 0.4906 2.8395 26 1 2.4112 -1.2481 4.3574 27 1 3.0677 -2.1720 -0.7701 28 1 4.5974 -4.3285 -2.8024 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261330237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = 46.830189 kcal Electronic energy + Delta-G solvation = -12244.267200 eV Core-core repulsion = 10102.719649 eV Total energy + Delta-G solvation = -2141.547551 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.45511 -36.90346 -36.65902 -33.36747 -31.33911 -28.96018 -28.17309 -26.30744 -23.63824 -21.73778 -20.65509 -19.21814 -18.50463 -16.58312 -16.10402 -16.00939 -15.44507 -15.22518 -14.38079 -14.17890 -14.00232 -13.33524 -13.17236 -12.98570 -12.96194 -12.40716 -12.39282 -12.07198 -11.94883 -11.92324 -10.41183 -10.35045 -10.21603 -8.33879 -8.31224 -5.62873 1.39241 1.44096 1.57161 1.65761 1.96781 2.44873 2.61484 3.30195 3.34442 3.71026 4.04349 4.11781 4.27135 4.64952 4.68500 4.74814 4.81523 4.89987 5.00019 5.17476 5.24589 5.41802 5.75935 5.80832 6.25125 6.57999 6.94178 7.35916 7.65627 8.07686 8.89501 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.045966 B = 0.010673 C = 0.009190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.004621 B = 2622.724707 C = 3045.973738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 C -0.147 4.147 4 N -0.492 5.492 5 C -0.095 4.095 6 C -0.034 4.034 7 N -0.606 5.606 8 C 0.452 3.548 9 N -0.584 5.584 10 C -0.282 4.282 11 H 0.086 0.914 12 C -0.038 4.038 13 N -0.947 5.947 14 Si 0.996 3.004 15 H -0.275 1.275 16 H -0.278 1.278 17 H -0.271 1.271 18 H 0.097 0.903 19 H 0.039 0.961 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.199 0.801 26 H 0.178 0.822 27 H 0.397 0.603 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 9.531 2.493 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.205 4.205 4 N -0.188 5.188 5 C -0.225 4.225 6 C -0.180 4.180 7 N -0.338 5.338 8 C 0.100 3.900 9 N -0.214 5.214 10 C -0.412 4.412 11 H 0.104 0.896 12 C -0.234 4.234 13 N -0.592 5.592 14 Si 0.821 3.179 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.196 1.196 18 H 0.116 0.884 19 H 0.058 0.942 20 H 0.096 0.904 21 H 0.088 0.912 22 H 0.058 0.942 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.216 0.784 26 H 0.196 0.804 27 H 0.232 0.768 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.203 8.768 2.566 11.042 hybrid contribution 0.073 -0.123 -0.725 0.739 sum -6.130 8.644 1.840 10.756 Atomic orbital electron populations 1.22070 0.91801 1.02114 1.04540 1.21472 0.96684 0.94531 0.85368 1.22069 1.00649 0.93265 1.04530 1.45535 1.42462 1.23271 1.07580 1.22418 1.11857 1.06484 0.81707 1.22390 1.01088 0.94760 0.99801 1.70415 1.32645 1.31943 0.98804 1.20036 0.93908 0.86919 0.89157 1.39308 1.52010 1.27856 1.02236 1.19593 1.24640 1.02619 0.94396 0.89620 1.25900 1.00736 1.02546 0.94256 1.69772 1.48663 1.42777 0.97941 0.84848 0.77751 0.77646 0.77641 1.20142 1.20324 1.19565 0.88408 0.94156 0.90395 0.91158 0.94162 0.88408 0.90408 0.78394 0.80449 0.76805 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.25 71.98 0.67 -2.81 15 2 C 0.12 3.71 3.59 44.99 0.16 3.87 15 3 C -0.15 -3.48 9.26 71.98 0.67 -2.81 15 4 N -0.49 -19.14 2.65 -503.26 -1.33 -20.47 15 5 C -0.09 -3.25 10.64 83.01 0.88 -2.36 15 6 C -0.03 -1.38 11.85 83.53 0.99 -0.39 15 7 N -0.61 -30.96 10.55 -197.98 -2.09 -33.05 15 8 C 0.45 22.70 8.44 260.39 2.20 24.90 15 9 N -0.58 -32.05 5.41 -192.88 -1.04 -33.09 15 10 C -0.28 -16.58 9.80 84.01 0.82 -15.76 15 11 H 0.09 5.22 7.37 -2.91 -0.02 5.20 15 12 C -0.04 -2.15 5.50 84.84 0.47 -1.68 15 13 N -0.95 -54.59 13.05 21.63 0.28 -54.31 15 14 Si 1.00 45.39 29.55 68.60 2.03 47.42 15 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 18 H 0.10 1.73 8.14 -2.38 -0.02 1.71 15 19 H 0.04 1.12 8.14 -2.39 -0.02 1.10 15 20 H 0.08 1.58 7.95 -2.39 -0.02 1.56 15 21 H 0.07 2.42 6.84 -2.39 -0.02 2.41 15 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.10 1.73 8.14 -2.38 -0.02 1.71 15 24 H 0.08 1.58 7.97 -2.39 -0.02 1.56 15 25 H 0.20 4.80 8.06 -2.91 -0.02 4.78 15 26 H 0.18 5.80 8.06 -2.91 -0.02 5.78 15 27 H 0.40 21.45 6.72 -92.71 -0.62 20.83 15 28 H 0.27 14.65 8.31 -92.71 -0.77 13.87 15 Total: -1.00 -68.60 244.70 5.23 -63.37 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.53 Total: 27.19 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.85 Total: 2.94 kcal Atomic # 7 Polarization: -136.74 SS G_CDS: -4.18 Total: -140.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.60 5.23 -63.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.202 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds