Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47153 * 2 1 4 4 C 1.34965 * 125.97161 * 124.99928 * 3 2 1 5 5 C 1.35250 * 107.85873 * 180.22557 * 4 3 2 6 6 C 1.40429 * 107.86589 * 359.64258 * 5 4 3 7 7 N 1.39982 * 125.97621 * 180.14917 * 6 5 4 8 8 C 1.46495 * 120.00178 * 0.22150 * 7 6 5 9 9 C 1.50704 * 109.47246 * 180.02562 * 8 7 6 10 10 H 1.07990 * 120.00018 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00093 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99962 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47139 * 90.00603 * 13 11 9 15 15 H 1.48504 * 109.47124 * 210.00215 * 13 11 9 16 16 H 1.48500 * 109.47183 * 330.00598 * 13 11 9 17 17 N 1.31223 * 108.04451 * 0.35842 * 6 5 4 18 18 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.47427 * 300.00904 * 1 2 3 20 20 H 1.09005 * 109.46990 * 59.99978 * 1 2 3 21 21 H 1.08993 * 109.47212 * 239.99843 * 2 1 3 22 22 H 1.09006 * 109.46812 * 119.99257 * 2 1 3 23 23 H 1.08002 * 126.06683 * 359.95586 * 4 3 2 24 24 H 1.07999 * 126.06095 * 179.77136 * 5 4 3 25 25 H 0.97001 * 119.99863 * 180.23292 * 7 6 5 26 26 H 1.09001 * 109.47582 * 300.00561 * 8 7 6 27 27 H 1.09008 * 109.47011 * 60.00343 * 8 7 6 28 28 H 0.96992 * 120.00232 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8733 1.9198 0.8948 5 6 3.0705 3.2136 0.5532 6 6 2.3131 3.4750 -0.6000 7 7 2.2423 4.6978 -1.2777 8 6 3.0081 5.8490 -0.7935 9 6 2.7584 7.0324 -1.6926 10 1 2.0953 6.9367 -2.5395 11 6 3.3766 8.2374 -1.4337 12 7 3.1584 9.2703 -2.2179 13 14 4.5231 8.4031 0.0318 14 1 5.9083 8.0648 -0.3826 15 1 4.4842 9.7996 0.5353 16 1 4.0881 7.4766 1.1078 17 7 1.6797 2.3737 -0.9286 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5140 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 3.3173 1.4096 1.7367 24 1 3.7005 3.9196 1.0738 25 1 1.6861 4.7829 -2.0678 26 1 2.6956 6.0922 0.2220 27 1 4.0708 5.6064 -0.7983 28 1 3.5930 10.1180 -2.0356 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300882374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = 78.933207 kcal Electronic energy + Delta-G solvation = -11711.769649 eV Core-core repulsion = 9571.614189 eV Total energy + Delta-G solvation = -2140.155460 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.50313 -35.47910 -33.57613 -32.20482 -29.77918 -28.58848 -26.89945 -23.11604 -22.11005 -20.33291 -19.46043 -17.21913 -16.52322 -15.31173 -14.93647 -14.31657 -14.02781 -13.55731 -13.33106 -12.76810 -12.51222 -12.24835 -12.05703 -11.97377 -11.32212 -10.89110 -10.79225 -9.95277 -9.85782 -9.59541 -9.40800 -8.66328 -8.18659 -6.81192 -6.15388 -4.16234 2.42089 2.88481 3.27140 3.34075 3.37383 3.69080 4.34822 4.42767 4.76464 5.00948 5.10408 5.19134 5.20863 5.54771 5.69012 5.95386 6.15611 6.26324 6.31361 6.69125 7.01224 7.13366 7.45218 7.54238 7.89103 8.24647 8.70102 8.78936 8.98399 9.44911 10.97286 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.077006 B = 0.007425 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.520171 B = 3769.924582 C = 4058.415505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 N -0.387 5.387 4 C 0.065 3.935 5 C -0.305 4.305 6 C 0.347 3.653 7 N -0.701 5.701 8 C 0.239 3.761 9 C -0.537 4.537 10 H 0.079 0.921 11 C 0.075 3.925 12 N -0.895 5.895 13 Si 0.879 3.121 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.262 1.262 17 N -0.372 5.372 18 H 0.067 0.933 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.165 0.835 24 H 0.140 0.860 25 H 0.399 0.601 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 -16.034 7.451 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 N -0.170 5.170 4 C -0.081 4.081 5 C -0.338 4.338 6 C 0.088 3.912 7 N -0.340 5.340 8 C 0.116 3.884 9 C -0.575 4.575 10 H 0.097 0.903 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.706 3.294 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.187 1.187 17 N -0.207 5.207 18 H 0.086 0.914 19 H 0.077 0.923 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.182 0.818 24 H 0.158 0.842 25 H 0.234 0.766 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.520 -16.393 6.746 17.792 hybrid contribution 1.044 0.653 1.051 1.619 sum -0.476 -15.740 7.797 17.572 Atomic orbital electron populations 1.22037 0.94461 1.01998 1.03657 1.21422 0.95623 0.78296 1.02683 1.48072 1.37361 1.09463 1.22136 1.22250 0.95492 0.94412 0.95938 1.21112 1.12772 0.96897 1.02995 1.19551 0.92661 0.87631 0.91380 1.44224 1.52688 1.05654 1.31420 1.19373 0.90446 0.83226 0.95346 1.21093 1.29665 0.93524 1.13199 0.90274 1.24809 0.96214 0.95347 0.96463 1.69884 1.43437 1.01876 1.38037 0.86789 0.81512 0.77748 0.83354 1.19931 1.20991 1.18676 1.77388 1.30211 0.96539 1.16523 0.91435 0.92319 0.91066 0.90680 0.89469 0.81805 0.84210 0.76628 0.96714 0.97168 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.10 37.16 0.38 -1.29 15 2 C 0.14 1.50 7.23 -4.04 -0.03 1.48 15 3 N -0.39 -6.07 3.68 -61.38 -0.23 -6.29 15 4 C 0.07 0.97 11.44 -17.24 -0.20 0.77 15 5 C -0.30 -5.64 10.11 -39.82 -0.40 -6.04 15 6 C 0.35 7.33 8.16 -154.55 -1.26 6.07 15 7 N -0.70 -15.98 5.76 -61.24 -0.35 -16.33 15 8 C 0.24 5.91 4.43 -5.19 -0.02 5.89 15 9 C -0.54 -15.20 9.83 -34.44 -0.34 -15.53 15 10 H 0.08 2.39 7.84 -52.49 -0.41 1.98 15 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 12 N -0.89 -27.06 13.96 55.43 0.77 -26.29 15 13 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 15 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.26 -6.03 6.54 56.52 0.37 -5.66 15 17 N -0.37 -7.37 12.43 31.41 0.39 -6.98 15 18 H 0.07 0.49 8.14 -51.93 -0.42 0.07 15 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.09 0.64 8.07 -51.93 -0.42 0.22 15 23 H 0.16 1.66 8.06 -52.49 -0.42 1.24 15 24 H 0.14 2.50 7.90 -52.49 -0.41 2.09 15 25 H 0.40 8.95 8.45 -40.82 -0.34 8.61 15 26 H 0.02 0.37 7.20 -51.93 -0.37 0.00 15 27 H 0.01 0.26 7.57 -51.92 -0.39 -0.13 15 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 246.77 15.07 3.72 3.72 Total: -1.00 -32.17 246.77 -5.98 -38.15 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.64 Total: 4.19 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.97 Total: -6.61 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.59 Total: -55.89 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.17 -5.98 -38.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300882374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.083 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds