Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99443 * 2 1 3 5 5 C 1.35033 * 125.96513 * 274.72007 * 4 2 1 6 6 C 1.35172 * 107.90833 * 179.89439 * 5 4 2 7 7 C 1.40566 * 107.86990 * 0.36289 * 6 5 4 8 8 N 1.39495 * 125.99808 * 179.73605 * 7 6 5 9 9 C 1.36837 * 119.99816 * 0.02562 * 8 7 6 10 10 H 1.07997 * 120.00054 * 359.97438 * 9 8 7 11 11 C 1.38774 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00019 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00196 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47190 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47167 * 119.99820 * 13 11 9 16 16 H 1.48504 * 109.47323 * 240.00089 * 13 11 9 17 17 N 1.31410 * 108.00592 * 359.77814 * 7 6 5 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 22 22 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 23 23 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.07994 * 126.04436 * 0.03278 * 5 4 2 26 26 H 1.08000 * 126.06587 * 180.11732 * 6 5 4 27 27 H 0.96996 * 120.00021 * 180.02562 * 8 7 6 28 28 H 0.96994 * 120.00100 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1979 -0.1359 2.4142 6 6 2.6565 -1.0981 3.2455 7 6 2.7706 -2.2882 2.5063 8 7 3.2149 -3.5172 2.9945 9 6 3.5876 -3.6382 4.3055 10 1 3.5382 -2.7823 4.9622 11 6 4.0290 -4.8609 4.7913 12 7 4.0888 -5.9042 3.9912 13 14 4.5371 -5.0264 6.5812 14 1 4.3780 -3.7173 7.2640 15 1 3.6804 -6.0401 7.2472 16 1 5.9576 -5.4532 6.6551 17 7 2.3862 -2.0398 1.2745 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 2.0065 0.8937 2.6781 26 1 2.8969 -0.9735 4.2910 27 1 3.2596 -4.2858 2.4046 28 1 4.3970 -6.7589 4.3308 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300913944.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = 78.078261 kcal Electronic energy + Delta-G solvation = -11907.795176 eV Core-core repulsion = 9767.602643 eV Total energy + Delta-G solvation = -2140.192533 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.99803 -35.78679 -34.15327 -31.24536 -28.94167 -27.94037 -27.17875 -24.25224 -22.14670 -19.42239 -19.23732 -17.02456 -16.53143 -15.30323 -14.52640 -14.16794 -13.85421 -13.50326 -12.78972 -12.60063 -12.31156 -12.07481 -11.70077 -11.38006 -11.31112 -11.05890 -10.87456 -10.27268 -10.15583 -10.09940 -9.23739 -8.60535 -7.70189 -6.78710 -6.19105 -3.47568 2.90930 3.27415 3.30403 3.35866 3.40850 4.22433 4.31432 4.80958 5.08523 5.23528 5.38472 5.42067 5.50806 5.52026 5.73843 5.76284 5.92875 6.06905 6.27479 6.53707 6.82824 6.92242 7.46930 7.66242 8.08215 8.18700 8.80272 9.18225 9.74204 10.04246 11.00628 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.084544 B = 0.007672 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.107877 B = 3648.783370 C = 3826.194768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.167 3.833 3 C -0.161 4.161 4 N -0.390 5.390 5 C 0.058 3.942 6 C -0.301 4.301 7 C 0.333 3.667 8 N -0.564 5.564 9 C -0.279 4.279 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.909 5.909 13 Si 0.927 3.073 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 N -0.407 5.407 18 H 0.063 0.937 19 H 0.065 0.935 20 H 0.057 0.943 21 H 0.091 0.909 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.152 0.848 26 H 0.133 0.867 27 H 0.401 0.599 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 12.122 -4.507 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 C -0.220 4.220 4 N -0.173 5.173 5 C -0.087 4.087 6 C -0.335 4.335 7 C 0.073 3.927 8 N -0.188 5.188 9 C -0.410 4.410 10 H 0.110 0.890 11 C -0.190 4.190 12 N -0.552 5.552 13 Si 0.756 3.244 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.211 1.211 17 N -0.247 5.247 18 H 0.082 0.918 19 H 0.084 0.916 20 H 0.076 0.924 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.170 0.830 26 H 0.151 0.849 27 H 0.236 0.764 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.573 11.555 -5.497 13.588 hybrid contribution 0.404 -0.099 1.558 1.613 sum -4.169 11.456 -3.938 12.812 Atomic orbital electron populations 1.22240 0.95016 1.02946 1.01887 1.20820 0.93812 0.91911 0.87067 1.22163 1.02140 0.95001 1.02663 1.47968 1.54823 1.07472 1.07042 1.21979 1.01889 0.98427 0.86419 1.20967 1.19001 0.92680 1.00827 1.19477 0.94281 0.88442 0.90510 1.39778 1.63876 1.04919 1.10246 1.19469 1.39524 0.96646 0.85355 0.88986 1.25079 0.99162 0.95166 0.99628 1.69718 1.49015 1.01003 1.35440 0.85831 0.78021 0.78160 0.82434 1.19649 1.21061 1.21064 1.77493 1.36719 0.92586 1.17909 0.91772 0.91588 0.92403 0.89052 0.91944 0.91768 0.90927 0.83040 0.84937 0.76422 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.52 37.16 0.35 -1.62 15 2 C 0.17 2.35 3.93 -67.93 -0.27 2.08 15 3 C -0.16 -1.70 8.83 37.16 0.33 -1.37 15 4 N -0.39 -7.48 3.53 -54.88 -0.19 -7.68 15 5 C 0.06 1.07 10.57 -17.23 -0.18 0.88 15 6 C -0.30 -6.69 10.01 -39.80 -0.40 -7.08 15 7 C 0.33 8.46 8.10 -154.83 -1.25 7.20 15 8 N -0.56 -15.59 5.46 -10.91 -0.06 -15.65 15 9 C -0.28 -7.78 9.70 -15.12 -0.15 -7.93 15 10 H 0.09 2.46 6.47 -52.49 -0.34 2.12 15 11 C 0.01 0.28 5.50 -17.45 -0.10 0.19 15 12 N -0.91 -26.48 13.05 55.49 0.72 -25.75 15 13 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 15 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 17 N -0.41 -9.79 12.60 31.37 0.40 -9.39 15 18 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 19 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.06 0.61 7.14 -51.93 -0.37 0.24 15 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.15 2.11 7.24 -52.49 -0.38 1.73 15 26 H 0.13 2.83 7.10 -52.49 -0.37 2.46 15 27 H 0.40 11.53 8.01 -40.82 -0.33 11.20 15 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 244.82 15.07 3.69 3.69 Total: -1.00 -31.38 244.82 -5.59 -36.97 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.46 Total: 9.16 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.66 Total: -7.65 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.87 Total: -58.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.38 -5.59 -36.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300913944.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.047 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds