Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99443 * 2 1 3 5 5 C 1.35033 * 125.96513 * 274.72007 * 4 2 1 6 6 C 1.35172 * 107.90833 * 179.89439 * 5 4 2 7 7 C 1.40566 * 107.86990 * 0.36289 * 6 5 4 8 8 N 1.39495 * 125.99808 * 179.73605 * 7 6 5 9 9 C 1.36837 * 119.99816 * 0.02562 * 8 7 6 10 10 H 1.07997 * 120.00054 * 359.97438 * 9 8 7 11 11 C 1.38774 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00019 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00196 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47190 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47167 * 119.99820 * 13 11 9 16 16 H 1.48504 * 109.47323 * 240.00089 * 13 11 9 17 17 N 1.31410 * 108.00592 * 359.77814 * 7 6 5 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 22 22 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 23 23 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.07994 * 126.04436 * 0.03278 * 5 4 2 26 26 H 1.08000 * 126.06587 * 180.11732 * 6 5 4 27 27 H 0.96996 * 120.00021 * 180.02562 * 8 7 6 28 28 H 0.96994 * 120.00100 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1979 -0.1359 2.4142 6 6 2.6565 -1.0981 3.2455 7 6 2.7706 -2.2882 2.5063 8 7 3.2149 -3.5172 2.9945 9 6 3.5876 -3.6382 4.3055 10 1 3.5382 -2.7823 4.9622 11 6 4.0290 -4.8609 4.7913 12 7 4.0888 -5.9042 3.9912 13 14 4.5371 -5.0264 6.5812 14 1 4.3780 -3.7173 7.2640 15 1 3.6804 -6.0401 7.2472 16 1 5.9576 -5.4532 6.6551 17 7 2.3862 -2.0398 1.2745 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 2.0065 0.8937 2.6781 26 1 2.8969 -0.9735 4.2910 27 1 3.2596 -4.2858 2.4046 28 1 4.3970 -6.7589 4.3308 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300913944.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = 57.345856 kcal Electronic energy + Delta-G solvation = -11908.694200 eV Core-core repulsion = 9767.602643 eV Total energy + Delta-G solvation = -2141.091558 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.66210 -37.38954 -35.76313 -33.19895 -30.64912 -29.55171 -28.09665 -26.29667 -23.53739 -21.14299 -20.83760 -18.98444 -18.02359 -16.94222 -16.13226 -15.85312 -15.38067 -15.09517 -14.27199 -13.87818 -13.65551 -13.28183 -13.06208 -13.02198 -12.89437 -12.40530 -12.26130 -11.99341 -11.94049 -11.79366 -11.03145 -10.55289 -9.43857 -8.65010 -8.26285 -5.60152 1.30617 1.45966 1.49919 1.60716 1.90664 2.35524 2.43117 3.33992 3.53673 3.80632 4.09431 4.17275 4.23489 4.56847 4.73638 4.85303 4.89713 4.99060 5.14341 5.21450 5.28207 5.33232 5.46179 5.70295 6.17114 6.64548 6.88669 7.17641 7.71520 8.00103 8.95646 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.084544 B = 0.007672 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.107877 B = 3648.783370 C = 3826.194768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.150 3.850 3 C -0.153 4.153 4 N -0.381 5.381 5 C 0.091 3.909 6 C -0.342 4.342 7 C 0.307 3.693 8 N -0.591 5.591 9 C -0.291 4.291 10 H 0.098 0.902 11 C -0.046 4.046 12 N -0.952 5.952 13 Si 1.002 2.998 14 H -0.257 1.257 15 H -0.282 1.282 16 H -0.282 1.282 17 N -0.438 5.438 18 H 0.035 0.965 19 H 0.103 0.897 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.209 0.791 26 H 0.134 0.866 27 H 0.386 0.614 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 15.088 -4.379 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 C -0.211 4.211 4 N -0.164 5.164 5 C -0.056 4.056 6 C -0.375 4.375 7 C 0.050 3.950 8 N -0.216 5.216 9 C -0.422 4.422 10 H 0.116 0.884 11 C -0.242 4.242 12 N -0.596 5.596 13 Si 0.826 3.174 14 H -0.180 1.180 15 H -0.208 1.208 16 H -0.208 1.208 17 N -0.277 5.277 18 H 0.054 0.946 19 H 0.122 0.878 20 H 0.084 0.916 21 H 0.102 0.898 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.226 0.774 26 H 0.152 0.848 27 H 0.218 0.782 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.334 14.569 -5.410 16.431 hybrid contribution 0.520 -0.832 1.281 1.614 sum -4.814 13.738 -4.129 15.131 Atomic orbital electron populations 1.22193 0.93123 1.01822 1.04195 1.21422 0.95304 0.93638 0.84741 1.22152 1.01519 0.92183 1.05201 1.48495 1.52901 1.05901 1.09055 1.22626 0.98219 0.99881 0.84894 1.21146 1.22073 0.92587 1.01706 1.19863 0.94818 0.88741 0.91625 1.39807 1.66138 1.05480 1.10182 1.19812 1.39431 0.97147 0.85763 0.88389 1.26077 0.99290 0.94585 1.04275 1.69864 1.50642 1.01525 1.37577 0.84713 0.77346 0.78586 0.76763 1.18042 1.20822 1.20815 1.77352 1.36404 0.96049 1.17913 0.94610 0.87802 0.91576 0.89816 0.90311 0.92733 0.87534 0.77404 0.84827 0.78159 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.52 71.98 0.69 -2.57 15 2 C 0.15 3.77 3.93 44.99 0.18 3.95 15 3 C -0.15 -2.48 8.83 71.98 0.64 -1.85 15 4 N -0.38 -13.91 3.53 -327.55 -1.16 -15.07 15 5 C 0.09 3.10 10.57 83.49 0.88 3.98 15 6 C -0.34 -15.01 10.01 22.13 0.22 -14.79 15 7 C 0.31 16.03 8.10 133.54 1.08 17.11 15 8 N -0.59 -34.21 5.46 -188.44 -1.03 -35.24 15 9 C -0.29 -16.73 9.70 84.04 0.82 -15.92 15 10 H 0.10 5.33 6.47 -2.91 -0.02 5.31 15 11 C -0.05 -2.63 5.50 84.85 0.47 -2.16 15 12 N -0.95 -57.45 13.05 21.64 0.28 -57.17 15 13 Si 1.00 44.37 29.55 68.60 2.03 46.40 15 14 H -0.26 -10.59 7.11 99.48 0.71 -9.89 15 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 17 N -0.44 -21.33 12.60 -54.68 -0.69 -22.02 15 18 H 0.03 0.95 8.14 -2.39 -0.02 0.93 15 19 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.07 1.29 8.14 -2.38 -0.02 1.27 15 21 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.08 1.06 7.14 -2.39 -0.02 1.05 15 23 H 0.05 1.02 8.14 -2.39 -0.02 1.01 15 24 H 0.11 1.09 8.14 -2.39 -0.02 1.07 15 25 H 0.21 4.61 7.24 -2.91 -0.02 4.58 15 26 H 0.13 5.69 7.10 -2.91 -0.02 5.67 15 27 H 0.39 23.62 8.01 -92.71 -0.74 22.88 15 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 Total: -1.00 -71.43 244.82 4.81 -66.62 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.41 Total: 28.73 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.97 Total: -12.25 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -2.59 Total: -129.50 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.43 4.81 -66.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300913944.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.965 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds