Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48492 * 109.46976 * 269.99828 * 3 2 1 5 5 H 1.48500 * 109.47017 * 29.99867 * 3 2 1 6 6 H 1.48510 * 109.46860 * 149.99837 * 3 2 1 7 7 C 1.37883 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00597 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99714 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00228 * 179.97438 * 10 9 7 12 12 H 1.08999 * 115.57490 * 9.15431 * 11 10 9 13 13 C 1.52306 * 117.53709 * 154.99724 * 11 10 9 14 14 H 1.09000 * 115.91759 * 0.92775 * 13 11 10 15 15 C 1.52074 * 119.84043 * 217.27010 * 13 11 10 16 16 C 1.52869 * 110.51259 * 310.45222 * 15 13 11 17 17 C 1.53300 * 108.59233 * 305.10693 * 16 15 13 18 18 C 1.52879 * 108.57833 * 74.44471 * 17 16 15 19 19 C 1.52071 * 60.63721 * 107.45322 * 13 11 10 20 20 H 1.08999 * 117.25275 * 252.86719 * 19 13 11 21 21 H 0.97003 * 119.99216 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47421 * 59.99653 * 9 7 2 23 23 H 1.08999 * 109.46914 * 299.99608 * 9 7 2 24 24 H 1.00906 * 111.00399 * 56.04563 * 10 9 7 25 25 H 1.09004 * 109.26605 * 70.71746 * 15 13 11 26 26 H 1.08998 * 109.27213 * 190.18291 * 15 13 11 27 27 H 1.09004 * 109.61744 * 185.37752 * 16 15 13 28 28 H 1.09005 * 109.76706 * 64.92977 * 16 15 13 29 29 H 1.09000 * 109.61573 * 314.71637 * 17 16 15 30 30 H 1.09000 * 109.76860 * 194.25948 * 17 16 15 31 31 H 1.09008 * 109.35420 * 185.26912 * 18 17 16 32 32 H 1.09003 * 109.35764 * 65.69182 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.4276 -4.8580 -0.1549 13 6 2.2452 -6.1097 -0.5696 14 1 3.2580 -5.9209 -0.9257 15 6 1.4856 -7.1550 -1.3714 16 6 0.2320 -7.6007 -0.6187 17 6 0.6451 -8.0821 0.7769 18 6 0.9847 -6.8615 1.6325 19 6 2.0387 -6.0058 0.9335 20 1 2.9102 -5.7631 1.5415 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8405 -3.5488 0.7819 25 1 1.1960 -6.7303 -2.3327 26 1 2.1300 -8.0178 -1.5395 27 1 -0.2492 -8.4158 -1.1593 28 1 -0.4602 -6.7636 -0.5270 29 1 1.5196 -8.7279 0.6972 30 1 -0.1763 -8.6331 1.2350 31 1 1.3696 -7.1923 2.5972 32 1 0.0837 -6.2684 1.7895 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306177000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = -19.521556 kcal Electronic energy + Delta-G solvation = -12179.270340 eV Core-core repulsion = 10138.385905 eV Total energy + Delta-G solvation = -2040.884435 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57672 -36.49581 -34.64823 -32.58438 -31.62361 -28.33778 -25.09662 -23.56289 -23.37106 -21.80460 -19.20086 -18.49757 -17.13553 -16.72260 -15.97660 -15.09125 -14.98718 -14.69861 -14.60534 -14.27413 -13.54659 -13.17514 -13.01890 -12.92968 -12.70580 -12.47798 -12.12432 -11.99621 -11.67950 -11.41014 -11.14501 -11.09324 -10.63995 -10.48282 -8.86016 -8.25622 -6.38083 1.39805 1.42380 1.53637 2.38001 2.85048 3.07392 3.35591 3.86142 3.91784 4.01599 4.13340 4.32264 4.40104 4.49035 4.65685 4.73961 4.84248 4.88327 5.06890 5.07256 5.12361 5.20098 5.27573 5.34387 5.37899 5.46739 5.55796 5.59946 5.98532 6.41988 6.67894 6.84265 7.33210 8.86149 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072721 B = 0.006878 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.939829 B = 4070.269554 C = 4097.226380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.214 3.786 10 N -0.661 5.661 11 C 0.003 3.997 12 H 0.082 0.918 13 C -0.122 4.122 14 H 0.093 0.907 15 C -0.084 4.084 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.089 4.089 19 C -0.159 4.159 20 H 0.101 0.899 21 H 0.266 0.734 22 H -0.003 1.003 23 H -0.039 1.039 24 H 0.334 0.666 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -14.788 1.320 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.086 3.914 10 N -0.290 5.290 11 C -0.108 4.108 12 H 0.100 0.900 13 C -0.142 4.142 14 H 0.112 0.888 15 C -0.122 4.122 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.127 4.127 19 C -0.179 4.179 20 H 0.119 0.881 21 H 0.075 0.925 22 H 0.015 0.985 23 H -0.022 1.022 24 H 0.153 0.847 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.401 -14.631 0.637 14.840 hybrid contribution -0.247 1.208 0.814 1.478 sum 2.154 -13.422 1.450 13.671 Atomic orbital electron populations 1.70102 1.07903 1.28148 1.51249 1.26009 0.95845 1.03562 0.94331 0.85264 0.78474 0.77583 0.78548 1.19742 1.20451 1.18646 1.21548 0.93840 0.91407 1.51088 0.91708 1.19186 0.90546 0.88710 0.92967 1.60318 1.19797 1.00678 1.48169 1.22714 0.95745 0.86069 1.06257 0.90027 1.22148 1.00519 0.97407 0.94126 0.88834 1.20859 0.96631 0.97166 0.97511 1.21631 0.97010 1.00695 0.96783 1.21528 1.01897 0.96597 0.94783 1.21066 0.96602 0.96162 0.98823 1.22853 1.01136 1.01312 0.92622 0.88136 0.92490 0.98525 1.02157 0.84732 0.92265 0.89585 0.89976 0.93864 0.90670 0.90599 0.90340 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.98 45.03 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.99 9.32 25.60 0.24 -31.75 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.09 5.29 85.56 0.45 12.55 16 10 N -0.66 -30.62 6.77 -495.64 -3.35 -33.98 16 11 C 0.00 0.12 5.44 44.91 0.24 0.36 16 12 H 0.08 3.42 7.02 -2.39 -0.02 3.40 16 13 C -0.12 -3.73 5.93 -11.63 -0.07 -3.80 16 14 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 15 C -0.08 -2.06 5.93 30.25 0.18 -1.88 16 16 C -0.12 -2.77 5.70 30.65 0.17 -2.60 16 17 C -0.11 -2.23 5.93 30.65 0.18 -2.05 16 18 C -0.09 -2.20 5.83 30.46 0.18 -2.02 16 19 C -0.16 -4.75 5.90 -10.98 -0.06 -4.81 16 20 H 0.10 2.92 8.09 -2.39 -0.02 2.90 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H -0.04 -2.38 8.14 -2.39 -0.02 -2.40 16 24 H 0.33 14.65 8.52 -89.69 -0.76 13.88 16 25 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.04 1.15 7.12 -2.38 -0.02 1.13 16 29 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 Total: -1.00 -65.00 259.75 1.25 -63.74 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.32 Total: 16.12 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 1.98 Total: -35.50 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -3.07 Total: -91.41 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.00 1.25 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.223 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds