Wall clock time and date at job start Mon Mar 30 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00155 * 2 1 4 4 H 1.09007 * 109.46972 * 35.00067 * 3 2 1 5 5 C 1.52999 * 109.47168 * 275.00564 * 3 2 1 6 6 C 1.50693 * 109.47135 * 155.00015 * 3 2 1 7 7 C 1.40131 * 126.01123 * 39.97839 * 6 3 2 8 8 N 1.30939 * 108.40731 * 179.73877 * 7 6 3 9 9 N 1.40090 * 108.26010 * 0.43739 * 8 7 6 10 10 C 1.37401 * 126.11743 * 179.81985 * 9 8 7 11 11 H 1.08002 * 120.00461 * 179.69751 * 10 9 8 12 12 C 1.38992 * 119.99633 * 359.41601 * 10 9 8 13 13 N 1.31284 * 120.00151 * 0.27681 * 12 10 9 14 14 Si 1.86803 * 119.99838 * 180.27824 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00076 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00027 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99826 * 14 12 10 18 18 C 1.35238 * 126.00985 * 219.99906 * 6 3 2 19 19 H 1.09007 * 109.47001 * 300.00042 * 1 2 3 20 20 H 1.09004 * 109.47576 * 59.99595 * 1 2 3 21 21 H 1.09006 * 109.47388 * 179.97438 * 1 2 3 22 22 H 1.00899 * 110.99918 * 123.95395 * 2 1 3 23 23 H 1.08998 * 109.46799 * 180.02562 * 5 3 2 24 24 H 1.08998 * 109.46870 * 299.99431 * 5 3 2 25 25 H 1.08996 * 109.47570 * 59.99683 * 5 3 2 26 26 H 1.07999 * 125.79740 * 0.02562 * 7 6 3 27 27 H 0.97005 * 119.99955 * 179.97438 * 13 12 10 28 28 H 1.08007 * 126.20796 * 0.02562 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5895 5 6 2.0607 1.8927 -1.4370 6 6 3.3776 1.3789 0.6004 7 6 4.3720 0.4141 0.3910 8 7 5.4352 0.7617 1.0717 9 7 5.1527 1.9558 1.7476 10 6 6.0111 2.6425 2.5719 11 1 5.6903 3.5608 3.0412 12 6 7.2903 2.1521 2.8066 13 7 7.6802 1.0358 2.2362 14 14 8.4546 3.0815 3.9335 15 1 8.2834 2.6003 5.3279 16 1 9.8553 2.8493 3.4983 17 1 8.1509 4.5338 3.8701 18 6 3.8762 2.3177 1.4365 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8305 -0.5261 0.7814 23 1 2.4518 2.9101 -1.4370 24 1 2.7164 1.2518 -2.0264 25 1 1.0610 1.8873 -1.8713 26 1 4.2791 -0.4644 -0.2303 27 1 8.5732 0.6938 2.3997 28 1 3.3567 3.1948 1.7935 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306407579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:53 Heat of formation + Delta-G solvation = 74.755425 kcal Electronic energy + Delta-G solvation = -12057.733277 eV Core-core repulsion = 9917.396655 eV Total energy + Delta-G solvation = -2140.336622 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48578 -36.12349 -33.39835 -30.71115 -29.98663 -27.56852 -25.40963 -24.31901 -21.18521 -20.33015 -18.77278 -17.18052 -15.52983 -15.15494 -14.33411 -14.06584 -13.75368 -13.08554 -12.90341 -12.46588 -12.00292 -11.70007 -11.44086 -11.26784 -11.11754 -11.01110 -10.70418 -10.61517 -10.29230 -9.36821 -8.61685 -8.03400 -7.95717 -7.10165 -6.51871 -4.22684 2.98135 3.07038 3.11426 3.63295 3.86448 4.28455 4.78712 4.86360 5.06962 5.57088 5.68409 5.79644 6.07585 6.08558 6.18454 6.32432 6.36508 6.48381 6.81116 6.91806 6.98976 7.21679 7.42482 7.74562 7.93351 7.96199 8.28220 8.74366 9.46145 9.72996 10.44749 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.083236 B = 0.008316 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.310754 B = 3366.268003 C = 3449.037683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.689 5.689 3 C 0.178 3.822 4 H 0.030 0.970 5 C -0.127 4.127 6 C -0.284 4.284 7 C -0.027 4.027 8 N -0.266 5.266 9 N -0.152 5.152 10 C -0.330 4.330 11 H 0.114 0.886 12 C 0.048 3.952 13 N -0.775 5.775 14 Si 0.932 3.068 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.264 1.264 18 C -0.052 4.052 19 H 0.015 0.985 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.345 0.655 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.151 0.849 27 H 0.273 0.727 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 1.371 -1.136 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.321 5.321 3 C 0.068 3.932 4 H 0.048 0.952 5 C -0.185 4.185 6 C -0.299 4.299 7 C -0.203 4.203 8 N -0.095 5.095 9 N 0.082 4.918 10 C -0.462 4.462 11 H 0.131 0.869 12 C -0.168 4.168 13 N -0.402 5.402 14 Si 0.756 3.244 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.189 1.189 18 C -0.203 4.203 19 H 0.033 0.967 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.163 0.837 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.169 0.831 27 H 0.084 0.916 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.784 0.849 -1.506 6.036 hybrid contribution -0.543 0.930 1.205 1.616 sum -6.327 1.779 -0.301 6.579 Atomic orbital electron populations 1.22193 0.89394 1.00848 0.99680 1.60504 1.06070 1.15177 1.50305 1.19442 0.91651 0.87560 0.94593 0.95215 1.21730 0.99898 1.00275 0.96622 1.19252 0.97406 1.01443 1.11771 1.23344 0.92412 1.00701 1.03847 1.78186 1.20504 0.98534 1.12317 1.44839 1.06948 1.13823 1.26217 1.19865 0.94188 1.07183 1.24952 0.86873 1.25599 0.97922 0.95985 0.97341 1.70210 1.18373 1.16687 1.34943 0.85873 0.79090 0.79763 0.79676 1.19663 1.20124 1.18871 1.21745 0.88795 1.02707 1.07034 0.96698 0.92294 0.92244 0.83680 0.93100 0.92344 0.94356 0.83127 0.91647 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.50 60.06 0.63 1.02 15 2 N -0.69 -11.49 6.46 -115.24 -0.74 -12.23 15 3 C 0.18 3.26 3.05 -68.87 -0.21 3.05 15 4 H 0.03 0.53 7.79 -51.92 -0.40 0.13 15 5 C -0.13 -2.14 9.40 37.16 0.35 -1.80 15 6 C -0.28 -6.40 4.81 -104.98 -0.51 -6.90 15 7 C -0.03 -0.67 11.46 -17.22 -0.20 -0.87 15 8 N -0.27 -7.62 10.42 30.70 0.32 -7.30 15 9 N -0.15 -4.22 3.73 -11.54 -0.04 -4.26 15 10 C -0.33 -8.94 10.26 -14.78 -0.15 -9.10 15 11 H 0.11 2.78 7.83 -52.49 -0.41 2.36 15 12 C 0.05 1.26 5.50 -17.51 -0.10 1.16 15 13 N -0.78 -21.86 11.82 55.49 0.66 -21.21 15 14 Si 0.93 19.28 29.55 -169.99 -5.02 14.25 15 15 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 18 C -0.05 -1.27 11.37 -16.64 -0.19 -1.46 15 19 H 0.01 0.19 8.06 -51.92 -0.42 -0.23 15 20 H 0.06 0.74 7.44 -51.93 -0.39 0.36 15 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.34 5.96 8.23 -39.29 -0.32 5.64 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.04 0.56 7.45 -51.93 -0.39 0.17 15 26 H 0.15 3.40 8.06 -52.49 -0.42 2.98 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.14 2.95 8.06 -52.48 -0.42 2.52 15 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -30.12 245.29 -5.09 -35.20 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.58 Total: 6.74 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.37 Total: -14.89 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.19 Total: -45.00 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.12 -5.09 -35.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306407579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.959 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds