Wall clock time and date at job start Mon Mar 30 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 H 1.08993 * 115.55914 * 9.30126 * 10 9 7 12 12 C 1.53041 * 117.50148 * 223.60065 * 10 9 7 13 13 C 1.52800 * 59.96814 * 252.52621 * 12 10 9 14 14 C 1.53154 * 117.74985 * 107.62890 * 13 12 10 15 15 C 1.53176 * 108.88765 * 199.62176 * 14 13 12 16 16 C 1.52942 * 109.45116 * 303.43432 * 15 14 13 17 17 C 1.52946 * 109.81881 * 62.98383 * 16 15 14 18 18 C 1.53150 * 117.75570 * 252.37129 * 13 12 10 19 19 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 20 20 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 21 21 H 1.09003 * 117.50435 * 0.02562 * 12 10 9 22 22 H 1.09005 * 117.50184 * 145.04700 * 12 10 9 23 23 H 1.09005 * 109.57066 * 319.44197 * 14 13 12 24 24 H 1.09000 * 109.57015 * 79.79471 * 14 13 12 25 25 H 1.09001 * 109.47294 * 183.44725 * 15 14 13 26 26 H 1.08994 * 109.47887 * 63.43537 * 15 14 13 27 27 H 1.09000 * 109.41492 * 302.87987 * 16 15 14 28 28 H 1.08996 * 109.41330 * 183.09304 * 16 15 14 29 29 H 1.09003 * 109.47161 * 177.01414 * 17 16 15 30 30 H 1.09007 * 109.47252 * 57.00760 * 17 16 15 31 31 H 1.09000 * 109.56596 * 280.19717 * 18 13 12 32 32 H 1.08997 * 109.56796 * 40.43065 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 3.1334 -3.5788 0.1582 12 6 1.5609 -4.7599 -0.9386 13 6 1.3462 -4.8829 0.5692 14 6 -0.0763 -4.6945 1.1046 15 6 -0.0043 -4.3691 2.5997 16 6 0.7542 -5.4804 3.3269 17 6 2.1947 -5.5446 2.8170 18 6 2.1934 -5.9079 1.3290 19 1 -0.4851 -0.8401 0.0004 20 1 0.3556 -2.3881 -0.0016 21 1 0.6891 -4.5414 -1.5553 22 1 2.3093 -5.4078 -1.3950 23 1 -0.5600 -3.8735 0.5752 24 1 -0.6462 -5.6119 0.9577 25 1 -1.0137 -4.2934 3.0041 26 1 0.5158 -3.4217 2.7408 27 1 0.2619 -6.4354 3.1429 28 1 0.7576 -5.2761 4.3975 29 1 2.7445 -6.3021 3.3756 30 1 2.6722 -4.5742 2.9538 31 1 1.7684 -6.9028 1.1964 32 1 3.2140 -5.8930 0.9467 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306882170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:42 Heat of formation + Delta-G solvation = 10.279327 kcal Electronic energy + Delta-G solvation = -12686.879014 eV Core-core repulsion = 10647.286842 eV Total energy + Delta-G solvation = -2039.592172 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94656 -35.11589 -33.22401 -30.56609 -29.48458 -26.67424 -23.62211 -22.35272 -20.81478 -20.63522 -18.03551 -17.41342 -15.41187 -14.58270 -14.30965 -13.88445 -13.62203 -13.36520 -12.74267 -12.39246 -11.90843 -11.85741 -11.24450 -10.99896 -10.71787 -10.70297 -10.54267 -10.43298 -10.07706 -9.97176 -9.66798 -9.36557 -8.85334 -8.62354 -6.92577 -6.16245 -3.14415 3.50172 3.56370 3.66228 4.55011 4.63324 5.06178 5.13845 5.30398 5.40786 5.51492 5.62201 5.73079 5.78623 5.83443 5.90894 5.96443 6.00649 6.19191 6.25964 6.37147 6.38794 6.42772 6.53776 6.58052 6.70065 6.85894 6.88472 6.97486 7.79464 8.69533 9.16582 10.02639 10.17322 11.31545 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.045819 B = 0.009993 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.948391 B = 2801.222225 C = 2920.738080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.087 2.913 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.336 4.336 8 H 0.068 0.932 9 N -0.696 5.696 10 C 0.164 3.836 11 H 0.099 0.901 12 C -0.227 4.227 13 C -0.166 4.166 14 C -0.070 4.070 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.071 4.071 19 H 0.255 0.745 20 H 0.371 0.629 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -10.550 3.921 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.918 3.082 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.467 4.467 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.050 3.950 11 H 0.117 0.883 12 C -0.268 4.268 13 C -0.169 4.169 14 C -0.107 4.107 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.109 4.109 19 H 0.067 0.933 20 H 0.206 0.794 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.824 -8.772 3.930 10.018 hybrid contribution -0.209 -1.853 -0.133 1.869 sum 2.615 -10.624 3.797 11.582 Atomic orbital electron populations 1.70823 1.06085 1.28520 1.53133 1.25837 0.97023 1.01127 1.00070 0.83128 0.73586 0.74844 0.76656 1.22001 1.21929 1.21927 1.20173 0.92260 0.85482 1.48772 0.91354 1.42068 1.04866 1.00195 1.86154 1.20921 0.94511 0.81683 0.97915 0.88341 1.23674 1.03830 1.07422 0.91916 1.22022 0.97351 1.03162 0.94375 1.20874 0.94316 1.00090 0.95445 1.21463 0.99410 0.99220 0.95130 1.21442 0.95979 0.98774 0.98874 1.21488 0.96619 1.01414 0.95728 1.20991 0.98370 0.97035 0.94466 0.93328 0.79435 0.90040 0.90235 0.92086 0.93169 0.92909 0.91083 0.92774 0.92805 0.92901 0.91695 0.92776 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.15 13.70 55.49 0.76 -28.39 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 3 Si 1.09 26.05 29.92 -169.99 -5.09 20.97 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.34 -9.52 9.98 -15.06 -0.15 -9.67 16 8 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 9 N -0.70 -17.82 5.39 -53.48 -0.29 -18.10 16 10 C 0.16 3.47 6.30 -67.99 -0.43 3.05 16 11 H 0.10 2.07 8.12 -51.93 -0.42 1.65 16 12 C -0.23 -4.21 9.92 -26.81 -0.27 -4.48 16 13 C -0.17 -2.94 1.97 -154.53 -0.31 -3.24 16 14 C -0.07 -1.22 5.44 -26.56 -0.14 -1.37 16 15 C -0.11 -1.91 5.93 -26.67 -0.16 -2.07 16 16 C -0.11 -1.60 5.82 -26.79 -0.16 -1.76 16 17 C -0.11 -1.64 5.93 -26.67 -0.16 -1.80 16 18 C -0.07 -1.06 5.67 -26.57 -0.15 -1.21 16 19 H 0.26 7.82 6.78 -40.82 -0.28 7.55 16 20 H 0.37 9.74 4.91 -40.82 -0.20 9.54 16 21 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 22 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.06 1.20 6.27 -51.93 -0.33 0.88 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 256.19 15.07 3.86 3.86 Total: -1.00 -30.01 256.19 -7.84 -37.85 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.08 Total: 7.72 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.01 Total: -23.90 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.47 Total: -46.50 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.09 Total: 20.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.01 -7.84 -37.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306882170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.129 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds