Wall clock time and date at job start Mon Mar 30 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 H 1.08993 * 115.55914 * 9.30126 * 10 9 7 12 12 C 1.53041 * 117.50148 * 223.60065 * 10 9 7 13 13 C 1.52800 * 59.96814 * 252.52621 * 12 10 9 14 14 C 1.53154 * 117.74985 * 107.62890 * 13 12 10 15 15 C 1.53176 * 108.88765 * 199.62176 * 14 13 12 16 16 C 1.52942 * 109.45116 * 303.43432 * 15 14 13 17 17 C 1.52946 * 109.81881 * 62.98383 * 16 15 14 18 18 C 1.53150 * 117.75570 * 252.37129 * 13 12 10 19 19 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 20 20 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 21 21 H 1.09003 * 117.50435 * 0.02562 * 12 10 9 22 22 H 1.09005 * 117.50184 * 145.04700 * 12 10 9 23 23 H 1.09005 * 109.57066 * 319.44197 * 14 13 12 24 24 H 1.09000 * 109.57015 * 79.79471 * 14 13 12 25 25 H 1.09001 * 109.47294 * 183.44725 * 15 14 13 26 26 H 1.08994 * 109.47887 * 63.43537 * 15 14 13 27 27 H 1.09000 * 109.41492 * 302.87987 * 16 15 14 28 28 H 1.08996 * 109.41330 * 183.09304 * 16 15 14 29 29 H 1.09003 * 109.47161 * 177.01414 * 17 16 15 30 30 H 1.09007 * 109.47252 * 57.00760 * 17 16 15 31 31 H 1.09000 * 109.56596 * 280.19717 * 18 13 12 32 32 H 1.08997 * 109.56796 * 40.43065 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 3.1334 -3.5788 0.1582 12 6 1.5609 -4.7599 -0.9386 13 6 1.3462 -4.8829 0.5692 14 6 -0.0763 -4.6945 1.1046 15 6 -0.0043 -4.3691 2.5997 16 6 0.7542 -5.4804 3.3269 17 6 2.1947 -5.5446 2.8170 18 6 2.1934 -5.9079 1.3290 19 1 -0.4851 -0.8401 0.0004 20 1 0.3556 -2.3881 -0.0016 21 1 0.6891 -4.5414 -1.5553 22 1 2.3093 -5.4078 -1.3950 23 1 -0.5600 -3.8735 0.5752 24 1 -0.6462 -5.6119 0.9577 25 1 -1.0137 -4.2934 3.0041 26 1 0.5158 -3.4217 2.7408 27 1 0.2619 -6.4354 3.1429 28 1 0.7576 -5.2761 4.3975 29 1 2.7445 -6.3021 3.3756 30 1 2.6722 -4.5742 2.9538 31 1 1.7684 -6.9028 1.1964 32 1 3.2140 -5.8930 0.9467 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306882170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:42 Heat of formation + Delta-G solvation = -7.133474 kcal Electronic energy + Delta-G solvation = -12687.634090 eV Core-core repulsion = 10647.286842 eV Total energy + Delta-G solvation = -2040.347248 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41010 -36.75657 -35.05893 -31.95642 -31.36872 -28.07291 -25.74939 -23.68017 -22.45565 -21.92403 -19.62516 -19.36905 -17.06773 -16.31974 -15.80624 -15.55174 -15.18530 -14.74391 -14.17470 -13.90455 -13.53058 -13.15263 -12.88280 -12.71963 -12.44004 -12.24690 -12.00339 -11.88302 -11.80654 -11.46259 -11.38063 -10.96768 -10.61807 -10.33254 -8.92934 -8.45432 -5.36911 1.56109 1.67703 1.79838 2.66958 3.01477 3.41700 3.54824 3.81097 3.90693 4.10740 4.12577 4.29316 4.34763 4.46149 4.54134 4.62434 4.77680 4.87765 4.94284 4.98826 5.07199 5.11852 5.20031 5.29317 5.34724 5.38957 5.55685 5.58234 5.59640 6.42480 7.03123 7.93466 8.05748 9.05767 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.045819 B = 0.009993 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.948391 B = 2801.222225 C = 2920.738080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.104 4.104 3 Si 1.135 2.865 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.334 4.334 8 H 0.069 0.931 9 N -0.714 5.714 10 C 0.122 3.878 11 H 0.096 0.904 12 C -0.212 4.212 13 C -0.140 4.140 14 C -0.073 4.073 15 C -0.113 4.113 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.070 4.070 19 H 0.242 0.758 20 H 0.363 0.637 21 H 0.068 0.932 22 H 0.106 0.894 23 H 0.028 0.972 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -12.512 4.513 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.295 4.295 3 Si 0.959 3.041 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.465 4.465 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.011 3.989 11 H 0.114 0.886 12 C -0.253 4.253 13 C -0.143 4.143 14 C -0.110 4.110 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.107 4.107 19 H 0.053 0.947 20 H 0.196 0.804 21 H 0.087 0.913 22 H 0.125 0.875 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.870 -10.804 4.521 12.335 hybrid contribution -0.513 -1.356 -0.324 1.486 sum 3.356 -12.160 4.197 13.295 Atomic orbital electron populations 1.70939 1.07217 1.27774 1.56164 1.27288 0.97089 1.04770 1.00321 0.82534 0.73767 0.71213 0.76588 1.19472 1.21667 1.21664 1.20507 0.92493 0.86777 1.46760 0.91298 1.42144 1.04567 1.01137 1.87319 1.21173 0.94489 0.81452 1.01818 0.88640 1.23643 1.03566 1.05471 0.92575 1.22106 0.97275 1.00804 0.94141 1.20920 0.94360 1.00040 0.95722 1.21430 1.00031 0.98561 0.95042 1.21435 0.95543 0.98396 0.99214 1.21501 0.96899 1.01092 0.95720 1.21072 0.98335 0.96968 0.94330 0.94749 0.80385 0.91293 0.87541 0.95275 0.90586 0.91970 0.95088 0.90537 0.91500 0.89815 0.94194 0.90193 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.33 13.70 21.65 0.30 -62.03 16 2 C -0.10 -6.16 5.50 84.86 0.47 -5.69 16 3 Si 1.13 53.01 29.92 68.60 2.05 55.06 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.33 -19.37 9.98 84.03 0.84 -18.54 16 8 H 0.07 3.89 7.82 -2.91 -0.02 3.86 16 9 N -0.71 -37.77 5.39 -323.13 -1.74 -39.51 16 10 C 0.12 5.19 6.30 44.95 0.28 5.47 16 11 H 0.10 4.04 8.12 -2.39 -0.02 4.02 16 12 C -0.21 -7.57 9.92 30.54 0.30 -7.27 16 13 C -0.14 -4.77 1.97 -52.20 -0.10 -4.87 16 14 C -0.07 -2.50 5.44 30.70 0.17 -2.33 16 15 C -0.11 -3.70 5.93 30.63 0.18 -3.51 16 16 C -0.11 -2.74 5.82 30.56 0.18 -2.56 16 17 C -0.11 -2.93 5.93 30.63 0.18 -2.75 16 18 C -0.07 -1.84 5.67 30.70 0.17 -1.66 16 19 H 0.24 15.58 6.78 -92.70 -0.63 14.95 16 20 H 0.36 20.05 4.91 -92.71 -0.46 19.59 16 21 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.11 3.22 8.14 -2.38 -0.02 3.21 16 23 H 0.03 1.17 6.27 -2.38 -0.01 1.16 16 24 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -66.08 256.19 4.05 -62.04 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.77 Total: 28.17 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 2.67 Total: -43.72 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -1.44 Total: -101.54 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 2.05 Total: 55.06 kcal Total: -66.08 4.05 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306882170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.904 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds