Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46733 * 110.99998 * 45.09388 * 10 9 7 12 12 C 1.53088 * 109.78217 * 124.48916 * 11 10 9 13 13 C 1.53216 * 109.07911 * 300.44007 * 12 11 10 14 14 C 1.53156 * 108.90730 * 57.78300 * 13 12 11 15 15 C 1.46734 * 110.99867 * 169.99945 * 10 9 7 16 16 C 1.53047 * 109.64272 * 175.61717 * 15 10 9 17 17 C 1.53221 * 109.64082 * 59.89700 * 12 11 10 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09004 * 109.41650 * 244.58240 * 11 10 9 22 22 H 1.08996 * 109.41994 * 4.39109 * 11 10 9 23 23 H 1.08999 * 109.65780 * 180.33672 * 12 11 10 24 24 H 1.08999 * 109.56247 * 297.95973 * 13 12 11 25 25 H 1.09000 * 109.66211 * 177.67012 * 13 12 11 26 26 H 1.08993 * 109.52990 * 240.47008 * 14 13 12 27 27 H 1.09001 * 109.52740 * 120.26769 * 14 13 12 28 28 H 1.09000 * 109.42308 * 55.60024 * 15 10 9 29 29 H 1.09006 * 109.52508 * 179.64678 * 16 15 10 30 30 H 1.08997 * 109.52628 * 299.83876 * 16 15 10 31 31 H 1.08993 * 109.56941 * 61.70419 * 17 12 11 32 32 H 1.09006 * 109.56341 * 181.93949 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 3.2823 -3.3870 0.9708 12 6 3.3613 -4.5656 1.9445 13 6 2.0217 -4.7019 2.6756 14 6 0.9089 -4.8938 1.6410 15 6 1.5218 -4.8921 0.2384 16 6 2.5249 -6.0422 0.1239 17 6 3.6438 -5.8564 1.1689 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 4.2309 -3.2888 0.4429 22 1 3.0811 -2.4709 1.5261 23 1 4.1577 -4.3909 2.6679 24 1 1.8291 -3.7994 3.2557 25 1 2.0535 -5.5641 3.3417 26 1 0.1890 -4.0798 1.7249 27 1 0.4070 -5.8451 1.8180 28 1 0.7328 -5.0241 -0.5020 29 1 2.0164 -6.9888 0.3071 30 1 2.9593 -6.0486 -0.8757 31 1 4.6052 -5.7747 0.6619 32 1 3.6657 -6.6998 1.8592 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306976169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -10.803960 kcal Electronic energy + Delta-G solvation = -13029.010249 eV Core-core repulsion = 10988.503837 eV Total energy + Delta-G solvation = -2040.506412 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.89363 -33.84295 -31.85277 -30.75501 -30.31443 -26.75481 -23.94067 -22.14006 -21.72511 -20.90417 -16.51024 -16.18961 -15.77073 -15.14702 -14.90996 -14.27998 -12.84591 -12.64133 -12.25230 -12.07106 -11.75260 -11.64541 -11.61296 -11.43926 -11.26951 -10.90854 -10.64619 -10.06975 -9.92144 -9.81958 -9.69054 -9.28520 -8.97559 -8.44738 -6.96196 -6.02091 -4.02073 3.31025 3.38552 3.43228 4.43892 4.95554 5.13309 5.17315 5.31891 5.38826 5.69201 5.70104 5.80913 5.85141 5.91521 6.02879 6.17164 6.29416 6.35893 6.45341 6.50428 6.63151 6.70556 6.79261 6.93510 6.96693 7.40378 7.58409 7.85099 8.13065 8.34735 8.66152 9.06165 9.61393 11.09202 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056555 B = 0.010741 C = 0.010243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.972124 B = 2606.251247 C = 2733.042954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.188 3.812 10 N -0.532 5.532 11 C 0.067 3.933 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.152 4.152 15 C 0.086 3.914 16 C -0.107 4.107 17 C -0.107 4.107 18 H 0.260 0.740 19 H -0.002 1.002 20 H 0.028 0.972 21 H 0.053 0.947 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -9.551 3.535 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.063 3.937 10 N -0.256 5.256 11 C -0.061 4.061 12 C -0.130 4.130 13 C -0.146 4.146 14 C -0.191 4.191 15 C -0.024 4.024 16 C -0.145 4.145 17 C -0.145 4.145 18 H 0.070 0.930 19 H 0.015 0.985 20 H 0.046 0.954 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.386 -9.439 3.057 10.848 hybrid contribution -0.057 1.017 0.816 1.305 sum 4.330 -8.422 3.873 10.231 Atomic orbital electron populations 1.69973 1.06042 1.26578 1.51000 1.24983 0.94840 0.99256 0.95450 0.86486 0.80120 0.83596 0.77507 1.19667 1.21000 1.21137 1.21317 0.93538 0.90268 1.50002 0.91728 1.19854 0.90747 0.86982 0.96129 1.62203 1.13141 1.02133 1.48102 1.22088 0.95323 0.96449 0.92201 1.21552 0.97013 0.96562 0.97864 1.21524 0.94964 1.00814 0.97341 1.22191 0.98461 1.01399 0.97074 1.21458 0.95157 0.91287 0.94490 1.21742 0.96522 0.97091 0.99184 1.21732 0.98504 0.96779 0.97478 0.93026 0.98452 0.95398 0.92829 0.90906 0.91684 0.92233 0.92930 0.91151 0.92791 0.90982 0.92674 0.91690 0.92360 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.48 7.84 -34.44 -0.27 -14.75 16 8 H 0.06 1.80 6.61 -52.49 -0.35 1.45 16 9 C 0.19 4.97 4.83 -4.97 -0.02 4.95 16 10 N -0.53 -11.84 4.85 -228.23 -1.11 -12.94 16 11 C 0.07 1.38 4.61 -3.87 -0.02 1.36 16 12 C -0.11 -1.84 3.25 -90.35 -0.29 -2.13 16 13 C -0.11 -1.80 5.75 -26.54 -0.15 -1.95 16 14 C -0.15 -2.68 5.48 -26.62 -0.15 -2.83 16 15 C 0.09 1.60 2.93 -67.75 -0.20 1.41 16 16 C -0.11 -1.67 5.91 -26.07 -0.15 -1.82 16 17 C -0.11 -1.58 5.88 -25.98 -0.15 -1.73 16 18 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 19 H 0.00 -0.06 6.02 -51.93 -0.31 -0.37 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.07 1.67 6.19 -51.93 -0.32 1.35 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.41 6.34 -51.93 -0.33 1.08 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.37 8.13 -51.93 -0.42 0.94 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 243.95 15.07 3.68 3.68 Total: -1.00 -29.30 243.95 -8.32 -37.62 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.09 Total: -3.01 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.51 Total: -16.01 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.37 Total: -39.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.30 -8.32 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306976169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.813 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds