Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46733 * 110.99998 * 45.09388 * 10 9 7 12 12 C 1.53088 * 109.78217 * 124.48916 * 11 10 9 13 13 C 1.53216 * 109.07911 * 300.44007 * 12 11 10 14 14 C 1.53156 * 108.90730 * 57.78300 * 13 12 11 15 15 C 1.46734 * 110.99867 * 169.99945 * 10 9 7 16 16 C 1.53047 * 109.64272 * 175.61717 * 15 10 9 17 17 C 1.53221 * 109.64082 * 59.89700 * 12 11 10 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09004 * 109.41650 * 244.58240 * 11 10 9 22 22 H 1.08996 * 109.41994 * 4.39109 * 11 10 9 23 23 H 1.08999 * 109.65780 * 180.33672 * 12 11 10 24 24 H 1.08999 * 109.56247 * 297.95973 * 13 12 11 25 25 H 1.09000 * 109.66211 * 177.67012 * 13 12 11 26 26 H 1.08993 * 109.52990 * 240.47008 * 14 13 12 27 27 H 1.09001 * 109.52740 * 120.26769 * 14 13 12 28 28 H 1.09000 * 109.42308 * 55.60024 * 15 10 9 29 29 H 1.09006 * 109.52508 * 179.64678 * 16 15 10 30 30 H 1.08997 * 109.52628 * 299.83876 * 16 15 10 31 31 H 1.08993 * 109.56941 * 61.70419 * 17 12 11 32 32 H 1.09006 * 109.56341 * 181.93949 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 3.2823 -3.3870 0.9708 12 6 3.3613 -4.5656 1.9445 13 6 2.0217 -4.7019 2.6756 14 6 0.9089 -4.8938 1.6410 15 6 1.5218 -4.8921 0.2384 16 6 2.5249 -6.0422 0.1239 17 6 3.6438 -5.8564 1.1689 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 4.2309 -3.2888 0.4429 22 1 3.0811 -2.4709 1.5261 23 1 4.1577 -4.3909 2.6679 24 1 1.8291 -3.7994 3.2557 25 1 2.0535 -5.5641 3.3417 26 1 0.1890 -4.0798 1.7249 27 1 0.4070 -5.8451 1.8180 28 1 0.7328 -5.0241 -0.5020 29 1 2.0164 -6.9888 0.3071 30 1 2.9593 -6.0486 -0.8757 31 1 4.6052 -5.7747 0.6619 32 1 3.6657 -6.6998 1.8592 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306976169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -29.773581 kcal Electronic energy + Delta-G solvation = -13029.832833 eV Core-core repulsion = 10988.503837 eV Total energy + Delta-G solvation = -2041.328996 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.38488 -35.76594 -33.79551 -32.24250 -31.61045 -28.78851 -25.76540 -23.51949 -23.25837 -22.64323 -18.52540 -17.64858 -17.35772 -16.71271 -16.59632 -16.09146 -14.66071 -14.24665 -14.06693 -13.75595 -13.36312 -13.04147 -12.90366 -12.89478 -12.87506 -12.70978 -12.48260 -11.96509 -11.74645 -11.37488 -11.11078 -10.84009 -10.74633 -10.62411 -8.75017 -8.23137 -6.31630 1.37912 1.38808 1.52278 2.38244 3.09850 3.38783 3.77413 3.85743 3.94733 4.28033 4.44770 4.48025 4.53541 4.58313 4.68453 4.81519 4.86150 4.98596 5.09501 5.14735 5.23009 5.26443 5.32770 5.40131 5.46443 5.47613 5.59788 5.67686 6.04532 6.42635 6.77408 6.88957 7.37365 8.89111 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056555 B = 0.010741 C = 0.010243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.972124 B = 2606.251247 C = 2733.042954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.542 5.542 11 C 0.067 3.933 12 C -0.107 4.107 13 C -0.107 4.107 14 C -0.149 4.149 15 C 0.075 3.925 16 C -0.101 4.101 17 C -0.101 4.101 18 H 0.264 0.736 19 H -0.027 1.027 20 H -0.008 1.008 21 H 0.055 0.945 22 H 0.039 0.961 23 H 0.087 0.913 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.031 0.969 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -10.870 4.342 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.266 5.266 11 C -0.061 4.061 12 C -0.126 4.126 13 C -0.145 4.145 14 C -0.188 4.188 15 C -0.034 4.034 16 C -0.139 4.139 17 C -0.138 4.138 18 H 0.073 0.927 19 H -0.009 1.009 20 H 0.010 0.990 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.105 0.895 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.089 -10.781 3.866 12.971 hybrid contribution -0.624 1.396 0.546 1.624 sum 5.464 -9.385 4.412 11.722 Atomic orbital electron populations 1.70104 1.07759 1.27770 1.51768 1.25928 0.95751 1.03226 0.94803 0.85347 0.79004 0.78593 0.77776 1.18661 1.20350 1.20316 1.21614 0.93672 0.91350 1.50011 0.91719 1.19453 0.90798 0.88604 0.93229 1.62083 1.12814 1.02226 1.49506 1.22045 0.94355 0.97266 0.92444 1.21545 0.97717 0.95888 0.97444 1.21543 0.94343 1.01405 0.97191 1.22132 0.98340 1.01464 0.96861 1.21655 0.96019 0.90841 0.94892 1.21721 0.96101 0.96467 0.99636 1.21742 0.98245 0.96412 0.97447 0.92726 1.00911 0.98953 0.92704 0.94216 0.89511 0.94325 0.89332 0.95026 0.89702 0.92317 0.89666 0.92008 0.91594 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.53 -30.86 7.84 25.60 0.20 -30.66 16 8 H 0.06 3.69 6.61 -2.91 -0.02 3.67 16 9 C 0.21 11.47 4.83 85.56 0.41 11.88 16 10 N -0.54 -24.69 4.85 -875.99 -4.25 -28.94 16 11 C 0.07 2.73 4.61 86.36 0.40 3.13 16 12 C -0.11 -3.28 3.25 -10.62 -0.03 -3.31 16 13 C -0.11 -3.34 5.75 30.72 0.18 -3.16 16 14 C -0.15 -5.16 5.48 30.67 0.17 -4.99 16 15 C 0.07 2.78 2.93 44.98 0.13 2.91 16 16 C -0.10 -2.84 5.91 31.02 0.18 -2.66 16 17 C -0.10 -2.54 5.88 31.08 0.18 -2.36 16 18 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 19 H -0.03 -1.59 6.02 -2.39 -0.01 -1.61 16 20 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 21 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 22 H 0.04 1.87 6.19 -2.39 -0.01 1.85 16 23 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.03 1.32 6.34 -2.39 -0.02 1.30 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -65.33 243.95 1.42 -63.91 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.07 Total: 3.80 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 2.28 Total: -28.70 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.96 Total: -86.25 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.33 1.42 -63.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306976169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.137 kcal (2) G-P(sol) polarization free energy of solvation -65.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds