Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99640 * 2 1 4 4 H 1.48504 * 109.46821 * 275.36899 * 3 2 1 5 5 H 1.48495 * 109.47461 * 35.37194 * 3 2 1 6 6 H 1.48495 * 109.47215 * 155.37172 * 3 2 1 7 7 C 1.38805 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00083 * 35.25931 * 7 2 1 9 9 N 1.36947 * 120.00341 * 215.25603 * 7 2 1 10 10 C 1.46895 * 120.67711 * 27.30274 * 9 7 2 11 11 C 1.53138 * 109.08329 * 124.68745 * 10 9 7 12 12 C 1.53170 * 109.36535 * 56.38662 * 11 10 9 13 13 C 1.52721 * 109.33386 * 300.82246 * 12 11 10 14 14 C 1.53376 * 113.58469 * 286.58267 * 13 12 11 15 15 C 1.53857 * 87.05369 * 270.39734 * 14 13 12 16 16 C 1.53349 * 113.63346 * 188.57972 * 13 12 11 17 17 C 1.47093 * 120.68297 * 207.28068 * 9 7 2 18 18 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 19 19 H 1.09008 * 109.53031 * 244.56667 * 10 9 7 20 20 H 1.09003 * 109.53944 * 4.79864 * 10 9 7 21 21 H 1.08996 * 109.48853 * 176.35084 * 11 10 9 22 22 H 1.09000 * 109.49194 * 296.39461 * 11 10 9 23 23 H 1.09000 * 109.49706 * 180.86519 * 12 11 10 24 24 H 1.08994 * 109.49490 * 60.77782 * 12 11 10 25 25 H 1.09000 * 113.63577 * 24.96023 * 14 13 12 26 26 H 1.08997 * 113.62964 * 155.83731 * 14 13 12 27 27 H 1.09004 * 113.60144 * 89.48862 * 15 14 13 28 28 H 1.08996 * 113.60516 * 220.35584 * 15 14 13 29 29 H 1.08995 * 113.63336 * 204.03038 * 16 13 12 30 30 H 1.08998 * 113.63168 * 334.91051 * 16 13 12 31 31 H 1.09004 * 109.64230 * 111.85684 * 17 9 7 32 32 H 1.08996 * 109.64551 * 351.22659 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3841 2.1120 -1.3940 5 1 1.5089 2.6173 0.8104 6 1 3.5998 1.4103 0.5834 7 6 2.0103 -1.2021 0.0005 8 1 1.6189 -2.0518 -0.5390 9 7 3.1914 -1.3105 0.6852 10 6 3.4589 -0.4657 1.8567 11 6 3.8017 -1.3603 3.0513 12 6 4.9879 -2.2591 2.6889 13 6 4.6234 -3.1128 1.4762 14 6 3.6377 -4.2436 1.7957 15 6 4.8651 -5.1211 2.0967 16 6 5.6589 -4.1969 1.1540 17 6 4.2178 -2.2757 0.2628 18 1 -0.4850 0.8400 0.0004 19 1 4.2983 0.1965 1.6444 20 1 2.5743 0.1279 2.0877 21 1 4.0646 -0.7389 3.9073 22 1 2.9398 -1.9786 3.3019 23 1 5.2240 -2.9076 3.5326 24 1 5.8535 -1.6408 2.4515 25 1 3.0159 -4.0475 2.6692 26 1 3.0622 -4.5784 0.9327 27 1 5.1932 -5.0713 3.1350 28 1 4.7712 -6.1434 1.7303 29 1 5.6440 -4.5199 0.1131 30 1 6.6620 -3.9628 1.5105 31 1 5.0872 -1.7417 -0.1209 32 1 3.8124 -2.9263 -0.5120 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307018878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = 18.839049 kcal Electronic energy + Delta-G solvation = -13061.334732 eV Core-core repulsion = 11022.113737 eV Total energy + Delta-G solvation = -2039.220995 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95458 -37.31008 -34.26743 -32.62820 -29.95456 -27.14283 -26.49382 -24.22127 -23.57489 -21.73087 -18.84558 -18.66304 -17.06179 -16.33310 -16.00704 -15.73102 -15.18616 -14.67016 -14.21069 -14.00034 -13.81626 -13.43516 -13.04883 -12.85165 -12.49128 -12.18512 -12.00940 -11.79793 -11.70333 -11.29079 -11.13627 -10.86037 -10.76880 -10.44341 -8.84897 -8.21820 -5.37141 1.34834 1.43874 1.52371 2.46399 2.94433 3.43130 3.81688 3.83754 3.91677 4.06452 4.35065 4.35837 4.46938 4.68587 4.76104 4.84936 4.92830 4.96849 5.02764 5.06436 5.12155 5.15951 5.19789 5.26887 5.33496 5.56415 5.63576 5.74875 5.89241 6.12272 6.96427 7.69029 8.12739 8.97053 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.053844 B = 0.012401 C = 0.011629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.894643 B = 2257.350429 C = 2407.113646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.019 4.019 3 Si 0.902 3.098 4 H -0.302 1.302 5 H -0.297 1.297 6 H -0.231 1.231 7 C -0.257 4.257 8 H 0.042 0.958 9 N -0.612 5.612 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.079 4.079 13 C -0.099 4.099 14 C -0.128 4.128 15 C -0.126 4.126 16 C -0.120 4.120 17 C 0.157 3.843 18 H 0.261 0.739 19 H 0.034 0.966 20 H 0.036 0.964 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.043 -6.356 6.229 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.216 4.216 3 Si 0.729 3.271 4 H -0.230 1.230 5 H -0.224 1.224 6 H -0.154 1.154 7 C -0.386 4.386 8 H 0.060 0.940 9 N -0.335 5.335 10 C 0.013 3.987 11 C -0.171 4.171 12 C -0.116 4.116 13 C -0.101 4.101 14 C -0.166 4.166 15 C -0.163 4.163 16 C -0.158 4.158 17 C 0.033 3.967 18 H 0.070 0.930 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.097 0.903 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.907 -6.281 6.222 15.645 hybrid contribution -0.609 1.103 -0.555 1.377 sum 12.298 -5.179 5.666 14.497 Atomic orbital electron populations 1.70183 1.07770 1.27326 1.52804 1.25763 0.95342 1.00566 0.99939 0.86551 0.81989 0.81434 0.77147 1.23006 1.22445 1.15433 1.18698 0.96326 0.95044 1.28518 0.94011 1.44434 1.16264 1.43720 1.29131 1.21361 0.97596 0.92694 0.87048 1.21973 0.98649 0.98743 0.97700 1.21140 0.96934 0.97215 0.96343 1.22031 0.97389 0.94265 0.96387 1.22766 0.96536 0.97031 1.00224 1.22841 0.95349 0.97887 1.00217 1.22865 0.97753 0.95242 0.99970 1.21081 0.90098 0.90688 0.94848 0.93022 0.94872 0.94531 0.90298 0.93598 0.90309 0.91430 0.93313 0.92528 0.89130 0.90856 0.90264 0.89988 0.95538 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.72 13.97 21.65 0.30 -59.41 16 2 C -0.02 -1.15 4.86 84.86 0.41 -0.73 16 3 Si 0.90 45.59 26.43 68.60 1.81 47.40 16 4 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 6 H -0.23 -10.67 4.82 99.48 0.48 -10.19 16 7 C -0.26 -14.96 9.88 84.03 0.83 -14.13 16 8 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16 9 N -0.61 -29.62 2.73 -699.42 -1.91 -31.53 16 10 C 0.14 6.00 4.31 86.35 0.37 6.37 16 11 C -0.13 -4.54 6.00 30.70 0.18 -4.36 16 12 C -0.08 -2.27 5.01 30.56 0.15 -2.11 16 13 C -0.10 -3.12 0.84 -52.07 -0.04 -3.16 16 14 C -0.13 -4.07 7.07 31.01 0.22 -3.85 16 15 C -0.13 -2.89 7.75 31.24 0.24 -2.65 16 16 C -0.12 -2.89 7.24 31.07 0.22 -2.66 16 17 C 0.16 6.29 5.69 86.23 0.49 6.78 16 18 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 19 H 0.03 1.39 6.69 -2.38 -0.02 1.38 16 20 H 0.04 1.76 5.57 -2.39 -0.01 1.75 16 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.05 1.74 7.28 -2.39 -0.02 1.72 16 23 H 0.08 1.87 7.33 -2.39 -0.02 1.86 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.65 7.27 -2.39 -0.02 1.64 16 26 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 27 H 0.09 1.81 7.63 -2.38 -0.02 1.79 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 30 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 31 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.05 1.90 7.78 -2.39 -0.02 1.88 16 Total: -1.00 -65.80 243.45 4.14 -61.66 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 0.85 Total: 2.39 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.08 Total: -20.51 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -1.61 Total: -90.94 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.81 Total: 47.40 kcal Total: -65.80 4.14 -61.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307018878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.501 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds