Wall clock time and date at job start Mon Mar 30 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 C 1.53001 * 109.46775 * 119.99809 * 12 10 9 14 14 C 1.52994 * 109.47572 * 299.99925 * 13 12 10 15 15 C 1.52996 * 109.47009 * 60.00218 * 14 13 12 16 16 C 1.52997 * 109.47282 * 359.97438 * 15 14 13 17 17 C 1.53003 * 109.47005 * 59.99869 * 16 15 14 18 18 C 1.52996 * 109.47208 * 300.00176 * 17 16 15 19 19 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 21 21 H 1.08999 * 109.46938 * 240.00009 * 12 10 9 22 22 H 1.09001 * 109.47276 * 0.02562 * 12 10 9 23 23 H 1.09006 * 109.46772 * 179.97438 * 13 12 10 24 24 H 1.09005 * 109.46952 * 300.00279 * 14 13 12 25 25 H 1.09001 * 109.47478 * 180.02562 * 14 13 12 26 26 H 1.09003 * 109.47061 * 240.00038 * 15 14 13 27 27 H 1.09002 * 109.47550 * 119.99857 * 15 14 13 28 28 H 1.09004 * 109.47577 * 180.02562 * 16 15 14 29 29 H 1.09008 * 109.46481 * 60.00400 * 17 16 15 30 30 H 1.09000 * 109.47125 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47062 * 239.99254 * 18 17 16 32 32 H 1.09010 * 109.47168 * 119.99709 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 6 1.7872 -5.3928 1.7628 14 6 0.2663 -5.2887 1.6328 15 6 -0.0976 -4.9023 0.1978 16 6 1.1807 -4.7483 -0.6287 17 6 1.9462 -6.0730 -0.6357 18 6 2.3101 -6.4593 0.7993 19 1 -0.4850 0.8401 0.0004 20 1 0.3555 -2.3880 -0.0068 21 1 3.5054 -4.1173 1.5141 22 1 2.0494 -3.2829 2.1081 23 1 2.0468 -5.6683 2.7850 24 1 -0.1058 -4.5282 2.3193 25 1 -0.1859 -6.2501 1.8763 26 1 -0.6426 -3.9584 0.2028 27 1 -0.7226 -5.6804 -0.2407 28 1 0.9215 -4.4725 -1.6509 29 1 1.3215 -6.8512 -1.0743 30 1 2.8567 -5.9633 -1.2249 31 1 3.3937 -6.5332 0.8920 32 1 1.8583 -7.4212 1.0423 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307246067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:27 Heat of formation + Delta-G solvation = -13.196202 kcal Electronic energy + Delta-G solvation = -12948.426584 eV Core-core repulsion = 10907.816437 eV Total energy + Delta-G solvation = -2040.610147 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83301 -34.10705 -31.22142 -30.70174 -30.39755 -27.72208 -23.63474 -22.13666 -21.46858 -20.76251 -17.22954 -16.00589 -15.89851 -15.29893 -14.85858 -14.08014 -13.02092 -12.83908 -12.13277 -11.73931 -11.65651 -11.55507 -11.46149 -11.43958 -11.19616 -10.81982 -10.80208 -10.20774 -10.00605 -9.80651 -9.51509 -9.22206 -9.13647 -8.77518 -6.85647 -5.70594 -2.97675 3.46317 3.52039 3.54171 4.64415 5.03155 5.10530 5.16119 5.62463 5.67936 5.70783 5.80953 5.85238 5.85696 5.89527 5.99899 6.09071 6.15117 6.28531 6.32667 6.46347 6.53804 6.61299 6.74889 6.84321 6.89494 7.04038 7.10491 7.30117 7.77446 8.49442 9.60076 10.21188 10.55962 11.52554 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060714 B = 0.010106 C = 0.009786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.070754 B = 2769.896470 C = 2860.615246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.043 0.957 12 C -0.133 4.133 13 C -0.084 4.084 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.092 4.092 17 C -0.109 4.109 18 C -0.110 4.110 19 H 0.253 0.747 20 H 0.383 0.617 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -11.899 1.296 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.213 4.213 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.073 3.927 11 H 0.061 0.939 12 C -0.173 4.173 13 C -0.103 4.103 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.147 4.147 18 C -0.148 4.148 19 H 0.063 0.937 20 H 0.218 0.782 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.562 -11.748 1.279 12.092 hybrid contribution 0.160 0.982 0.061 0.997 sum 2.722 -10.766 1.340 11.185 Atomic orbital electron populations 1.69671 1.05054 1.25333 1.58330 1.24718 0.95495 0.97557 1.03482 0.86150 0.78788 0.84384 0.77102 1.20636 1.22000 1.22009 1.19322 0.91008 0.84279 1.41775 0.91273 1.42587 1.05829 0.99686 1.88540 1.20159 0.93820 0.85875 0.92810 0.93884 1.22439 0.98534 0.95557 1.00801 1.21023 0.95475 0.96071 0.97715 1.21456 0.95469 1.00146 0.97407 1.21447 0.97092 1.01214 0.95007 1.21270 0.95728 0.94819 0.99302 1.21497 0.99731 0.97077 0.96434 1.21513 1.00027 0.97786 0.95445 0.93702 0.78157 0.93725 0.91046 0.92526 0.92108 0.93230 0.91187 0.93186 0.91476 0.92707 0.92417 0.92589 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 3 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 7 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.50 4.87 -53.45 -0.26 -18.76 16 10 C 0.18 3.79 2.72 -67.95 -0.18 3.60 16 11 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.50 5.48 -26.73 -0.15 -2.65 16 13 C -0.08 -1.31 3.19 -90.65 -0.29 -1.60 16 14 C -0.11 -1.69 5.71 -26.74 -0.15 -1.85 16 15 C -0.11 -1.86 5.54 -26.73 -0.15 -2.00 16 16 C -0.09 -1.61 2.88 -90.64 -0.26 -1.87 16 17 C -0.11 -1.57 5.71 -26.73 -0.15 -1.73 16 18 C -0.11 -1.51 5.71 -26.76 -0.15 -1.66 16 19 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 20 H 0.38 10.32 6.06 -40.82 -0.25 10.08 16 21 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.07 1.53 7.85 -51.93 -0.41 1.12 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.35 6.51 -51.93 -0.34 1.01 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 247.23 15.07 3.73 3.73 Total: -1.00 -29.65 247.23 -7.75 -37.41 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.19 Total: 4.84 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -1.73 Total: -17.07 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.46 Total: -46.66 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.65 -7.75 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307246067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.211 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds