Wall clock time and date at job start Mon Mar 30 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 C 1.53001 * 109.46775 * 119.99809 * 12 10 9 14 14 C 1.52994 * 109.47572 * 299.99925 * 13 12 10 15 15 C 1.52996 * 109.47009 * 60.00218 * 14 13 12 16 16 C 1.52997 * 109.47282 * 359.97438 * 15 14 13 17 17 C 1.53003 * 109.47005 * 59.99869 * 16 15 14 18 18 C 1.52996 * 109.47208 * 300.00176 * 17 16 15 19 19 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 21 21 H 1.08999 * 109.46938 * 240.00009 * 12 10 9 22 22 H 1.09001 * 109.47276 * 0.02562 * 12 10 9 23 23 H 1.09006 * 109.46772 * 179.97438 * 13 12 10 24 24 H 1.09005 * 109.46952 * 300.00279 * 14 13 12 25 25 H 1.09001 * 109.47478 * 180.02562 * 14 13 12 26 26 H 1.09003 * 109.47061 * 240.00038 * 15 14 13 27 27 H 1.09002 * 109.47550 * 119.99857 * 15 14 13 28 28 H 1.09004 * 109.47577 * 180.02562 * 16 15 14 29 29 H 1.09008 * 109.46481 * 60.00400 * 17 16 15 30 30 H 1.09000 * 109.47125 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47062 * 239.99254 * 18 17 16 32 32 H 1.09010 * 109.47168 * 119.99709 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 6 1.7872 -5.3928 1.7628 14 6 0.2663 -5.2887 1.6328 15 6 -0.0976 -4.9023 0.1978 16 6 1.1807 -4.7483 -0.6287 17 6 1.9462 -6.0730 -0.6357 18 6 2.3101 -6.4593 0.7993 19 1 -0.4850 0.8401 0.0004 20 1 0.3555 -2.3880 -0.0068 21 1 3.5054 -4.1173 1.5141 22 1 2.0494 -3.2829 2.1081 23 1 2.0468 -5.6683 2.7850 24 1 -0.1058 -4.5282 2.3193 25 1 -0.1859 -6.2501 1.8763 26 1 -0.6426 -3.9584 0.2028 27 1 -0.7226 -5.6804 -0.2407 28 1 0.9215 -4.4725 -1.6509 29 1 1.3215 -6.8512 -1.0743 30 1 2.8567 -5.9633 -1.2249 31 1 3.3937 -6.5332 0.8920 32 1 1.8583 -7.4212 1.0423 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307246067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:26 Heat of formation + Delta-G solvation = -30.817592 kcal Electronic energy + Delta-G solvation = -12949.190705 eV Core-core repulsion = 10907.816437 eV Total energy + Delta-G solvation = -2041.374268 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21629 -36.04909 -33.14217 -32.10514 -31.63636 -29.50368 -25.67998 -23.38878 -22.87975 -22.28494 -19.31274 -17.47497 -17.25459 -16.79465 -16.47756 -15.88616 -14.95084 -14.43452 -13.65444 -13.24676 -13.00324 -12.87330 -12.85005 -12.82597 -12.78018 -12.75685 -12.49126 -12.02675 -11.90269 -11.39111 -11.17994 -10.67276 -10.61098 -10.50934 -8.95529 -7.93604 -5.20553 1.44988 1.45886 1.55924 2.55985 3.39127 3.74368 3.78597 3.90003 4.15475 4.42795 4.51591 4.54900 4.58102 4.59221 4.64735 4.73565 4.76705 4.84628 5.01388 5.18882 5.23061 5.28958 5.45481 5.49461 5.53641 5.56107 5.62569 5.66601 5.76839 6.30271 7.35175 8.15530 8.38453 9.30527 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060714 B = 0.010106 C = 0.009786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.070754 B = 2769.896470 C = 2860.615246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.737 5.737 10 C 0.174 3.826 11 H 0.032 0.968 12 C -0.127 4.127 13 C -0.081 4.081 14 C -0.106 4.106 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.104 4.104 18 C -0.105 4.105 19 H 0.249 0.751 20 H 0.373 0.627 21 H 0.054 0.946 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -13.892 1.489 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.066 3.934 11 H 0.050 0.950 12 C -0.167 4.167 13 C -0.100 4.100 14 C -0.143 4.143 15 C -0.146 4.146 16 C -0.109 4.109 17 C -0.142 4.142 18 C -0.142 4.142 19 H 0.058 0.942 20 H 0.206 0.794 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.621 -13.781 1.475 14.325 hybrid contribution -0.144 1.569 -0.007 1.576 sum 3.477 -12.212 1.468 12.782 Atomic orbital electron populations 1.69831 1.06567 1.25765 1.60142 1.25532 0.96387 1.00955 1.04295 0.85099 0.78214 0.80030 0.76622 1.19139 1.22064 1.22147 1.19679 0.91303 0.85531 1.40183 0.91051 1.42796 1.05532 1.00868 1.88588 1.20430 0.93607 0.85130 0.94214 0.95000 1.22263 0.99287 0.96884 0.98285 1.21022 0.94899 0.94559 0.99472 1.21463 0.95963 1.01029 0.95888 1.21425 0.96781 1.00263 0.96165 1.21221 0.95924 0.95649 0.98091 1.21486 0.99834 0.95311 0.97575 1.21510 1.00949 0.97961 0.93822 0.94172 0.79396 0.92771 0.94569 0.90732 0.94328 0.90036 0.94850 0.90567 0.93029 0.90334 0.91948 0.91454 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 7 C -0.23 -13.56 9.93 84.04 0.83 -12.72 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -38.84 4.87 -323.01 -1.57 -40.42 16 10 C 0.17 7.25 2.72 44.97 0.12 7.37 16 11 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 12 C -0.13 -4.72 5.48 30.59 0.17 -4.55 16 13 C -0.08 -2.31 3.19 -10.81 -0.03 -2.34 16 14 C -0.11 -3.14 5.71 30.59 0.17 -2.97 16 15 C -0.11 -3.57 5.54 30.59 0.17 -3.40 16 16 C -0.09 -3.06 2.88 -10.81 -0.03 -3.09 16 17 C -0.10 -2.64 5.71 30.59 0.17 -2.46 16 18 C -0.11 -2.41 5.71 30.58 0.17 -2.24 16 19 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 20 H 0.37 21.02 6.06 -92.71 -0.56 20.46 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 1.58 7.85 -2.39 -0.02 1.56 16 23 H 0.07 1.90 8.14 -2.38 -0.02 1.89 16 24 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.32 6.51 -2.39 -0.02 1.31 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -64.84 247.23 3.47 -61.37 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.52 Total: 21.10 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 2.22 Total: -30.67 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -1.29 Total: -101.40 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -64.84 3.47 -61.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307246067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.554 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds