Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47240 * 299.99679 * 3 2 1 6 6 H 1.48501 * 109.47203 * 60.00068 * 3 2 1 7 7 C 1.37879 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46870 * 179.97438 * 9 7 2 11 11 N 1.46910 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.46649 * 111.00013 * 293.95886 * 11 10 9 13 13 C 1.53314 * 108.82077 * 179.00380 * 12 11 10 14 14 C 1.53068 * 108.35358 * 73.67539 * 13 12 11 15 15 C 1.52944 * 109.51782 * 307.28333 * 14 13 12 16 16 H 1.09002 * 115.46613 * 232.15978 * 15 14 13 17 17 C 1.53591 * 116.03751 * 89.12835 * 15 14 13 18 18 C 1.45858 * 110.90442 * 167.94020 * 11 10 9 19 19 H 1.09003 * 114.35520 * 292.23180 * 18 11 10 20 20 H 0.97002 * 119.99574 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.47199 * 59.99976 * 9 7 2 22 22 H 1.08996 * 109.47444 * 299.99715 * 9 7 2 23 23 H 1.08995 * 109.46909 * 60.00378 * 10 9 7 24 24 H 1.08999 * 109.47716 * 299.99727 * 10 9 7 25 25 H 1.09000 * 109.58141 * 59.20036 * 12 11 10 26 26 H 1.09001 * 109.68639 * 298.86748 * 12 11 10 27 27 H 1.09003 * 109.68618 * 313.96330 * 13 12 11 28 28 H 1.08997 * 109.71771 * 193.41060 * 13 12 11 29 29 H 1.08994 * 109.46190 * 187.26876 * 14 13 12 30 30 H 1.09000 * 109.46132 * 67.29455 * 14 13 12 31 31 H 1.09002 * 117.53428 * 356.58306 * 17 15 14 32 32 H 1.08998 * 117.53009 * 141.73126 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 0.7668 -5.1111 1.2526 13 6 0.0013 -6.4380 1.1898 14 6 1.0052 -7.5818 1.3541 15 6 2.1389 -7.4161 0.3411 16 1 2.3493 -8.2910 -0.2742 17 6 3.3372 -6.5732 0.8021 18 6 2.4043 -6.0514 -0.2835 19 1 2.8021 -6.0615 -1.2983 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6043 0.8905 24 1 2.8719 -3.6045 -0.8894 25 1 0.0626 -4.2887 1.3782 26 1 1.4609 -5.1292 2.0929 27 1 -0.5017 -6.5265 0.2268 28 1 -0.7342 -6.4766 1.9932 29 1 0.5022 -8.5336 1.1840 30 1 1.4149 -7.5630 2.3640 31 1 3.2767 -6.1068 1.7854 32 1 4.3310 -6.9013 0.4973 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307259624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = 13.024764 kcal Electronic energy + Delta-G solvation = -12411.014320 eV Core-core repulsion = 10371.541199 eV Total energy + Delta-G solvation = -2039.473121 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56192 -34.57786 -32.70078 -32.33820 -29.09019 -25.81530 -24.04494 -22.67009 -21.50077 -19.85553 -18.26444 -16.65669 -15.86430 -14.80902 -14.45696 -14.31275 -13.67481 -13.27539 -12.93918 -12.51748 -12.14054 -11.70272 -11.37490 -11.02603 -10.94498 -10.75258 -10.55255 -10.50914 -10.11060 -9.78600 -9.65864 -9.17993 -9.07319 -8.31354 -7.57167 -5.97969 -4.00141 3.32372 3.39659 3.43813 3.92915 4.40129 4.56610 4.89335 4.99742 5.07676 5.23437 5.37768 5.42770 5.57780 5.74194 5.91410 6.01365 6.06428 6.08949 6.20499 6.31518 6.33434 6.48440 6.56279 6.60360 7.00412 7.55423 7.65334 7.84906 7.93613 8.10594 8.45836 9.07344 9.63398 11.13477 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.069214 B = 0.007805 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.445996 B = 3586.728927 C = 3842.840404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.068 3.932 11 N -0.511 5.511 12 C 0.054 3.946 13 C -0.119 4.119 14 C -0.089 4.089 15 C -0.152 4.152 16 H 0.102 0.898 17 C -0.225 4.225 18 C 0.048 3.952 19 H 0.112 0.888 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.017 0.983 23 H 0.021 0.979 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -12.805 2.025 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.058 4.058 11 N -0.232 5.232 12 C -0.074 4.074 13 C -0.157 4.157 14 C -0.127 4.127 15 C -0.171 4.171 16 H 0.120 0.880 17 C -0.265 4.265 18 C -0.063 4.063 19 H 0.130 0.870 20 H 0.069 0.931 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.270 -12.647 1.652 12.955 hybrid contribution 1.142 0.878 0.669 1.588 sum 3.412 -11.769 2.321 12.472 Atomic orbital electron populations 1.69986 1.06014 1.26434 1.50808 1.24996 0.94834 0.99175 0.95344 0.86542 0.80093 0.83829 0.77571 1.19782 1.20970 1.21050 1.21235 0.93039 0.91043 1.50659 0.92733 1.19117 0.94009 0.90113 0.97797 1.22291 0.96677 0.87743 0.99127 1.61348 1.26343 1.01579 1.33967 1.22144 0.97190 0.97986 0.90073 1.21682 0.97407 0.94159 1.02445 1.21132 0.95266 0.98747 0.97557 1.22461 0.97714 0.94960 1.01978 0.88004 1.23581 0.95061 1.06260 1.01587 1.22286 0.96227 0.90901 0.96861 0.86975 0.93070 0.95698 0.96502 0.96106 0.92055 0.89384 0.95432 0.90731 0.91709 0.91848 0.92149 0.89159 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 10 C 0.07 1.48 4.89 -3.82 -0.02 1.46 16 11 N -0.51 -9.74 4.69 -228.23 -1.07 -10.81 16 12 C 0.05 0.95 4.99 -3.80 -0.02 0.93 16 13 C -0.12 -1.70 6.06 -26.53 -0.16 -1.86 16 14 C -0.09 -1.12 5.91 -26.72 -0.16 -1.28 16 15 C -0.15 -2.03 6.24 -90.64 -0.57 -2.59 16 16 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 17 C -0.23 -3.18 9.70 -26.75 -0.26 -3.44 16 18 C 0.05 0.76 5.59 -68.91 -0.39 0.37 16 19 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 22 H 0.02 0.47 6.54 -51.93 -0.34 0.13 16 23 H 0.02 0.46 8.12 -51.93 -0.42 0.03 16 24 H 0.06 1.32 8.05 -51.93 -0.42 0.91 16 25 H 0.09 1.73 6.44 -51.93 -0.33 1.39 16 26 H 0.03 0.48 6.97 -51.93 -0.36 0.12 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.09 1.37 7.16 -51.93 -0.37 0.99 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 256.06 15.07 3.86 3.86 Total: -1.00 -29.90 256.06 -8.78 -38.68 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.17 Total: -2.65 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.11 Total: -19.54 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.33 Total: -37.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.90 -8.78 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307259624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.706 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds