Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47240 * 299.99679 * 3 2 1 6 6 H 1.48501 * 109.47203 * 60.00068 * 3 2 1 7 7 C 1.37879 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46870 * 179.97438 * 9 7 2 11 11 N 1.46910 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.46649 * 111.00013 * 293.95886 * 11 10 9 13 13 C 1.53314 * 108.82077 * 179.00380 * 12 11 10 14 14 C 1.53068 * 108.35358 * 73.67539 * 13 12 11 15 15 C 1.52944 * 109.51782 * 307.28333 * 14 13 12 16 16 H 1.09002 * 115.46613 * 232.15978 * 15 14 13 17 17 C 1.53591 * 116.03751 * 89.12835 * 15 14 13 18 18 C 1.45858 * 110.90442 * 167.94020 * 11 10 9 19 19 H 1.09003 * 114.35520 * 292.23180 * 18 11 10 20 20 H 0.97002 * 119.99574 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.47199 * 59.99976 * 9 7 2 22 22 H 1.08996 * 109.47444 * 299.99715 * 9 7 2 23 23 H 1.08995 * 109.46909 * 60.00378 * 10 9 7 24 24 H 1.08999 * 109.47716 * 299.99727 * 10 9 7 25 25 H 1.09000 * 109.58141 * 59.20036 * 12 11 10 26 26 H 1.09001 * 109.68639 * 298.86748 * 12 11 10 27 27 H 1.09003 * 109.68618 * 313.96330 * 13 12 11 28 28 H 1.08997 * 109.71771 * 193.41060 * 13 12 11 29 29 H 1.08994 * 109.46190 * 187.26876 * 14 13 12 30 30 H 1.09000 * 109.46132 * 67.29455 * 14 13 12 31 31 H 1.09002 * 117.53428 * 356.58306 * 17 15 14 32 32 H 1.08998 * 117.53009 * 141.73126 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 0.7668 -5.1111 1.2526 13 6 0.0013 -6.4380 1.1898 14 6 1.0052 -7.5818 1.3541 15 6 2.1389 -7.4161 0.3411 16 1 2.3493 -8.2910 -0.2742 17 6 3.3372 -6.5732 0.8021 18 6 2.4043 -6.0514 -0.2835 19 1 2.8021 -6.0615 -1.2983 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6043 0.8905 24 1 2.8719 -3.6045 -0.8894 25 1 0.0626 -4.2887 1.3782 26 1 1.4609 -5.1292 2.0929 27 1 -0.5017 -6.5265 0.2268 28 1 -0.7342 -6.4766 1.9932 29 1 0.5022 -8.5336 1.1840 30 1 1.4149 -7.5630 2.3640 31 1 3.2767 -6.1068 1.7854 32 1 4.3310 -6.9013 0.4973 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307259624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = -5.502514 kcal Electronic energy + Delta-G solvation = -12411.817723 eV Core-core repulsion = 10371.541199 eV Total energy + Delta-G solvation = -2040.276524 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83708 -36.29876 -34.56232 -33.66802 -31.00211 -27.32139 -25.88978 -23.91281 -23.02256 -21.43162 -19.54955 -18.61057 -17.35167 -16.56604 -16.14823 -15.64344 -15.21077 -14.61071 -14.37609 -14.19333 -13.83053 -13.33586 -12.94841 -12.76407 -12.59624 -12.36105 -11.99583 -11.91947 -11.66961 -11.47283 -11.24852 -11.03380 -10.63747 -10.52991 -9.03853 -8.21282 -6.32990 1.39431 1.40114 1.53534 2.39040 2.74397 3.11445 3.12666 3.81284 3.83015 3.94891 4.09018 4.16188 4.43987 4.50673 4.57996 4.62576 4.78555 4.87869 4.93911 5.00140 5.03535 5.09582 5.24534 5.27833 5.41184 5.44886 5.64984 5.78169 6.10495 6.32141 6.40115 6.83948 7.36167 8.91152 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.069214 B = 0.007805 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.445996 B = 3586.728927 C = 3842.840404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.086 3.914 11 N -0.524 5.524 12 C 0.053 3.947 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.132 4.132 16 H 0.130 0.870 17 C -0.218 4.218 18 C 0.015 3.985 19 H 0.117 0.883 20 H 0.264 0.736 21 H -0.008 1.008 22 H -0.007 1.007 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -13.984 2.232 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.041 4.041 11 N -0.246 5.246 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.126 4.126 15 C -0.151 4.151 16 H 0.147 0.853 17 C -0.257 4.257 18 C -0.095 4.095 19 H 0.135 0.865 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.012 0.988 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.437 -13.852 1.861 14.393 hybrid contribution 0.741 1.213 0.606 1.545 sum 4.178 -12.639 2.467 13.538 Atomic orbital electron populations 1.70122 1.07837 1.27762 1.51398 1.25985 0.95786 1.03381 0.94546 0.85354 0.78991 0.78526 0.77892 1.18610 1.20177 1.20243 1.21648 0.93508 0.92280 1.50980 0.92250 1.18925 0.94185 0.91958 0.94995 1.21891 0.95269 0.88095 0.98877 1.61221 1.27116 1.01506 1.34755 1.22133 0.96733 0.99038 0.89592 1.21651 0.97881 0.92749 1.02766 1.21189 0.94630 0.98995 0.97766 1.22660 0.97134 0.94042 1.01218 0.85257 1.23581 0.96322 1.05874 0.99964 1.22387 0.97721 0.91479 0.97863 0.86491 0.92703 0.98985 0.98833 0.96511 0.91945 0.92674 0.95546 0.91493 0.89925 0.89008 0.91454 0.90437 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.05 4.90 29.85 0.15 2.19 16 10 C 0.09 3.86 4.89 86.30 0.42 4.28 16 11 N -0.52 -20.27 4.69 -875.98 -4.11 -24.38 16 12 C 0.05 1.90 4.99 86.46 0.43 2.33 16 13 C -0.11 -3.07 6.06 30.72 0.19 -2.88 16 14 C -0.09 -1.93 5.91 30.60 0.18 -1.75 16 15 C -0.13 -3.09 6.24 -10.81 -0.07 -3.16 16 16 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.22 -5.65 9.70 30.58 0.30 -5.35 16 18 C 0.02 0.46 5.59 44.70 0.25 0.71 16 19 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 20 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 21 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 22 H -0.01 -0.39 6.54 -2.39 -0.02 -0.41 16 23 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 24 H 0.06 2.75 8.05 -2.39 -0.02 2.73 16 25 H 0.05 2.30 6.44 -2.39 -0.02 2.29 16 26 H 0.03 0.94 6.97 -2.39 -0.02 0.92 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.42 8.07 -2.39 -0.02 1.40 16 31 H 0.08 2.23 7.16 -2.39 -0.02 2.21 16 32 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -65.46 256.06 1.81 -63.65 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.07 Total: 6.27 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 2.54 Total: -34.99 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -3.82 Total: -81.97 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.46 1.81 -63.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307259624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.147 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds