Wall clock time and date at job start Mon Mar 30 2020 02:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39322 * 2 1 4 4 N 1.30503 * 108.69928 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25583 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.99348 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46879 * 304.99636 * 6 5 4 8 8 N 1.46502 * 109.47241 * 179.97438 * 7 6 5 9 9 C 1.36932 * 120.00200 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00178 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00141 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99792 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99913 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47139 * 90.00149 * 13 11 9 15 15 H 1.48497 * 109.47062 * 210.00664 * 13 11 9 16 16 H 1.48505 * 109.46922 * 329.99937 * 13 11 9 17 17 C 1.34675 * 108.02139 * 359.97438 * 5 4 3 18 18 H 1.09006 * 109.47289 * 269.95547 * 1 2 3 19 19 H 1.08996 * 109.47327 * 29.95915 * 1 2 3 20 20 H 1.09002 * 109.46825 * 149.95962 * 1 2 3 21 21 H 1.07997 * 125.65385 * 0.05440 * 3 2 1 22 22 H 1.09002 * 109.47034 * 64.99474 * 6 5 4 23 23 H 1.08993 * 109.47516 * 184.99697 * 6 5 4 24 24 H 1.08997 * 109.47603 * 299.99749 * 7 6 5 25 25 H 1.09007 * 109.47118 * 59.99845 * 7 6 5 26 26 H 0.97002 * 119.99473 * 0.02562 * 8 7 6 27 27 H 0.97003 * 119.99921 * 179.97438 * 12 11 9 28 28 H 1.07999 * 126.59056 * 179.74167 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 4.7890 -1.5024 -0.0018 7 6 5.6777 -1.1075 -1.1830 8 7 6.8863 -1.9354 -1.1831 9 6 7.8361 -1.7605 -2.1538 10 1 7.6940 -1.0124 -2.9197 11 6 8.9811 -2.5453 -2.1542 12 7 9.8937 -2.3774 -3.0876 13 14 9.2266 -3.8396 -0.8299 14 1 8.6435 -5.1280 -1.2828 15 1 10.6786 -4.0163 -0.5735 16 1 8.5529 -3.4034 0.4196 17 6 2.2772 -1.1017 -0.0009 18 1 -0.3634 -0.0008 1.0277 19 1 -0.3634 0.8903 -0.5132 20 1 -0.3633 -0.8897 -0.5145 21 1 1.9333 2.1144 0.0008 22 1 5.3341 -1.3502 0.9298 23 1 4.5100 -2.5522 -0.0921 24 1 5.1327 -1.2597 -2.1146 25 1 5.9568 -0.0577 -1.0927 26 1 7.0138 -2.6076 -0.4954 27 1 10.6940 -2.9255 -3.0876 28 1 1.9613 -2.1345 -0.0053 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313249395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:22 Heat of formation + Delta-G solvation = 74.446623 kcal Electronic energy + Delta-G solvation = -11599.395619 eV Core-core repulsion = 9459.045606 eV Total energy + Delta-G solvation = -2140.350013 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.94875 -35.48739 -33.98274 -31.93449 -30.30053 -28.33800 -26.47979 -23.57837 -21.47298 -20.92528 -19.84189 -17.51526 -16.83430 -15.72044 -14.68264 -14.42630 -14.08830 -13.85464 -13.26271 -12.98980 -12.93442 -12.74896 -12.26739 -11.18674 -11.06947 -10.77898 -10.65353 -10.04338 -9.69890 -9.49584 -9.43745 -8.75060 -8.22042 -7.07984 -5.64559 -2.98716 2.10485 2.78551 3.29079 3.46803 3.49805 3.53731 4.48732 4.68684 4.70717 4.84053 4.89459 5.08137 5.30251 5.49986 5.65531 5.95503 6.04914 6.11083 6.22456 6.31753 6.87152 6.98139 7.05691 7.25420 8.14247 8.23952 8.54968 9.35070 10.07507 10.28655 11.54364 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.084859 B = 0.006595 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.880613 B = 4244.741664 C = 4408.664860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.470 5.470 3 C 0.175 3.825 4 N -0.482 5.482 5 C 0.023 3.977 6 C -0.047 4.047 7 C 0.167 3.833 8 N -0.759 5.759 9 C -0.237 4.237 10 H 0.090 0.910 11 C -0.001 4.001 12 N -0.938 5.938 13 Si 0.886 3.114 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.276 1.276 17 C -0.064 4.064 18 H 0.073 0.927 19 H 0.085 0.915 20 H 0.083 0.917 21 H 0.202 0.798 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.359 0.641 27 H 0.258 0.742 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.963 3.163 8.172 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.154 5.154 3 C -0.107 4.107 4 N -0.200 5.200 5 C -0.107 4.107 6 C -0.086 4.086 7 C 0.039 3.961 8 N -0.405 5.405 9 C -0.367 4.367 10 H 0.107 0.893 11 C -0.196 4.196 12 N -0.587 5.587 13 Si 0.716 3.284 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.202 1.202 17 C -0.196 4.196 18 H 0.092 0.908 19 H 0.104 0.896 20 H 0.102 0.898 21 H 0.219 0.781 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.192 0.808 27 H 0.068 0.932 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.325 3.769 7.970 22.155 hybrid contribution -0.580 -1.414 0.854 1.751 sum -20.906 2.354 8.823 22.813 Atomic orbital electron populations 1.21978 0.77033 1.04486 1.03230 1.45370 1.07351 1.07175 1.55504 1.24996 0.85603 0.93499 1.06575 1.70209 1.19039 1.11868 1.18925 1.20704 0.93938 0.90518 1.05504 1.20106 0.91410 0.96545 1.00565 1.20508 0.86452 0.94933 0.94175 1.42754 1.20826 1.43409 1.33498 1.19104 0.96836 1.16497 1.04284 0.89259 1.24677 0.96826 0.99722 0.98343 1.69712 1.10680 1.43098 1.35216 0.86506 0.76966 0.82475 0.82418 1.21187 1.21831 1.20237 1.22470 0.90839 0.92460 1.13813 0.90838 0.89620 0.89845 0.78107 0.90862 0.90996 0.95894 0.94603 0.80823 0.93210 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.18 59.85 0.67 1.09 15 2 N -0.47 -5.07 3.15 -125.99 -0.40 -5.47 15 3 C 0.18 2.19 12.56 -90.37 -1.14 1.06 15 4 N -0.48 -8.21 11.23 -10.88 -0.12 -8.33 15 5 C 0.02 0.38 6.36 -82.85 -0.53 -0.15 15 6 C -0.05 -0.84 5.89 -27.88 -0.16 -1.01 15 7 C 0.17 3.70 6.23 -4.04 -0.03 3.67 15 8 N -0.76 -19.69 5.41 -59.91 -0.32 -20.01 15 9 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 15 10 H 0.09 2.90 8.06 -52.49 -0.42 2.48 15 11 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 15 12 N -0.94 -30.75 13.97 55.49 0.78 -29.97 15 13 Si 0.89 23.03 27.74 -169.99 -4.71 18.32 15 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 15 H -0.29 -7.64 7.11 56.52 0.40 -7.23 15 16 H -0.28 -6.76 6.52 56.52 0.37 -6.40 15 17 C -0.06 -0.83 11.46 -16.56 -0.19 -1.02 15 18 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 15 19 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 15 20 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 15 21 H 0.20 1.67 8.06 -52.49 -0.42 1.25 15 22 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 23 H 0.07 1.14 8.11 -51.93 -0.42 0.72 15 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 25 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.36 8.90 5.53 -40.82 -0.23 8.67 15 27 H 0.26 8.00 8.31 -40.82 -0.34 7.66 15 28 H 0.17 1.74 8.06 -52.49 -0.42 1.31 15 LS Contribution 246.86 15.07 3.72 3.72 Total: -1.00 -36.54 246.86 -6.31 -42.85 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.62 Total: 2.73 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.63 Total: -3.84 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.07 Total: -63.78 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -36.54 -6.31 -42.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313249395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.299 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds