Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48507 * 109.47108 * 269.99797 * 3 2 1 5 5 H 1.48498 * 109.47275 * 29.99321 * 3 2 1 6 6 H 1.48501 * 109.47461 * 149.99821 * 3 2 1 7 7 C 1.38811 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00218 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99834 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47367 * 31.52502 * 10 9 7 12 12 C 1.53000 * 109.46621 * 271.52444 * 10 9 7 13 13 C 1.53002 * 117.49806 * 128.62697 * 12 10 9 14 14 C 1.53003 * 117.50178 * 60.00146 * 12 10 9 15 15 C 1.52996 * 109.47205 * 151.52808 * 10 9 7 16 16 C 1.53777 * 113.61729 * 184.18405 * 15 10 9 17 17 C 1.53781 * 87.08139 * 139.98025 * 16 15 10 18 18 C 1.53781 * 87.08250 * 334.56922 * 17 16 15 19 19 H 0.96999 * 120.00121 * 0.02562 * 1 2 3 20 20 H 0.96996 * 119.99988 * 359.97438 * 9 7 2 21 21 H 1.09004 * 115.55381 * 274.32787 * 12 10 9 22 22 H 1.08992 * 117.49867 * 359.97438 * 13 12 10 23 23 H 1.09000 * 117.50213 * 145.02036 * 13 12 10 24 24 H 1.08997 * 117.49814 * 214.97502 * 14 12 10 25 25 H 1.08996 * 117.49659 * 0.02562 * 14 12 10 26 26 H 1.09007 * 112.90799 * 52.92940 * 15 10 9 27 27 H 1.08997 * 113.61774 * 254.52826 * 16 15 10 28 28 H 1.09005 * 113.61273 * 25.43178 * 16 15 10 29 29 H 1.08997 * 113.61416 * 89.11600 * 17 16 15 30 30 H 1.09000 * 113.61296 * 220.02036 * 17 16 15 31 31 H 1.09000 * 113.61588 * 270.88569 * 18 17 16 32 32 H 1.08994 * 113.69212 * 139.98980 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9979 -3.5333 0.5396 12 6 2.3474 -4.0798 -1.4399 13 6 3.7915 -4.4405 -1.7941 14 6 3.1839 -3.1307 -2.3004 15 6 1.2144 -4.7322 0.6892 16 6 1.9363 -6.0822 0.8343 17 6 1.3041 -6.1808 2.2326 18 6 1.2365 -4.6445 2.2243 19 1 -0.4850 0.8400 -0.0004 20 1 0.3555 -2.3881 0.0005 21 1 1.5530 -4.6391 -1.9343 22 1 4.5354 -4.3761 -1.0001 23 1 3.9474 -5.2373 -2.5214 24 1 2.9401 -3.0659 -3.3608 25 1 3.5285 -2.2052 -1.8393 26 1 0.2113 -4.8162 0.2711 27 1 1.5816 -6.8439 0.1400 28 1 3.0229 -5.9967 0.8514 29 1 0.3255 -6.6608 2.2365 30 1 1.9775 -6.5842 2.9888 31 1 2.1317 -4.1659 2.6214 32 1 0.3174 -4.2442 2.6521 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324764937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = 45.742204 kcal Electronic energy + Delta-G solvation = -12573.004665 eV Core-core repulsion = 10534.950279 eV Total energy + Delta-G solvation = -2038.054386 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.82877 -36.33347 -33.61185 -30.77758 -27.22374 -25.13424 -23.48332 -22.21725 -21.59865 -19.46822 -19.03095 -16.97489 -15.30017 -14.99133 -14.56122 -13.95095 -13.55915 -13.17729 -12.72488 -11.98640 -11.73557 -11.35230 -11.09596 -10.88890 -10.78982 -10.61956 -10.30276 -10.07072 -9.95626 -9.88481 -9.64951 -9.32350 -9.04085 -8.80055 -6.87225 -5.70197 -2.96833 3.45981 3.51316 3.52656 4.52178 4.69952 5.05171 5.12245 5.17935 5.34405 5.54587 5.64962 5.69855 5.78787 5.97313 6.01381 6.15674 6.19819 6.20415 6.29159 6.39290 6.46071 6.52602 6.60881 6.70912 6.83667 6.87229 7.05664 7.18757 7.74484 8.48500 9.59527 10.19481 10.54537 11.52695 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035153 B = 0.011587 C = 0.009512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.320706 B = 2415.971350 C = 2943.074314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.716 5.716 10 C 0.215 3.785 11 H 0.048 0.952 12 C -0.153 4.153 13 C -0.197 4.197 14 C -0.162 4.162 15 C -0.107 4.107 16 C -0.129 4.129 17 C -0.147 4.147 18 C -0.125 4.125 19 H 0.253 0.747 20 H 0.383 0.617 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -10.612 0.665 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.733 3.267 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.355 5.355 10 C 0.105 3.895 11 H 0.066 0.934 12 C -0.174 4.174 13 C -0.235 4.235 14 C -0.200 4.200 15 C -0.126 4.126 16 C -0.167 4.167 17 C -0.185 4.185 18 C -0.163 4.163 19 H 0.063 0.937 20 H 0.216 0.784 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.190 -10.441 0.699 11.272 hybrid contribution 0.102 0.993 -0.212 1.021 sum 4.293 -9.448 0.487 10.389 Atomic orbital electron populations 1.69655 1.05026 1.25397 1.58145 1.24690 0.95447 0.97448 1.03502 0.86273 0.78678 0.84327 0.77463 1.21862 1.21892 1.20878 1.19188 0.90733 0.84145 1.41835 0.91427 1.42367 1.05711 0.99564 1.87903 1.19823 0.94172 0.85716 0.89817 0.93398 1.23149 0.92040 1.02109 1.00143 1.22909 0.97526 0.99552 1.03507 1.22749 1.04197 0.94390 0.98624 1.22719 0.99489 0.94748 0.95688 1.22830 1.00027 0.97523 0.96349 1.22869 1.00449 0.97573 0.97583 1.22794 1.02157 0.94611 0.96722 0.93676 0.78373 0.89682 0.89796 0.90392 0.90481 0.87981 0.89971 0.92299 0.90409 0.90873 0.92264 0.90382 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.24 8.67 -15.06 -0.13 -6.37 16 8 H 0.07 1.82 7.22 -52.49 -0.38 1.44 16 9 N -0.72 -17.82 5.05 -53.43 -0.27 -18.09 16 10 C 0.21 4.31 2.29 -67.93 -0.16 4.15 16 11 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 12 C -0.15 -2.84 4.97 -90.62 -0.45 -3.29 16 13 C -0.20 -3.19 10.18 -26.73 -0.27 -3.46 16 14 C -0.16 -3.08 9.85 -26.73 -0.26 -3.34 16 15 C -0.11 -1.83 3.26 -89.81 -0.29 -2.12 16 16 C -0.13 -1.82 7.24 -25.92 -0.19 -2.00 16 17 C -0.15 -1.96 8.08 -25.92 -0.21 -2.17 16 18 C -0.13 -2.04 7.64 -25.92 -0.20 -2.24 16 19 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.38 10.26 7.83 -40.82 -0.32 9.94 16 21 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 22 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.10 2.17 6.54 -51.93 -0.34 1.83 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.32 8.02 -51.93 -0.42 0.91 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 263.54 15.07 3.97 3.97 Total: -1.00 -28.92 263.54 -8.06 -36.98 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.21 Total: 8.56 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.26 Total: -21.37 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.45 Total: -45.67 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.92 -8.06 -36.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324764937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.727 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds