Wall clock time and date at job start Mon Mar 30 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99951 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99799 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99701 * 359.73557 * 7 2 1 9 9 N 1.36935 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.09002 * 109.47048 * 324.99821 * 10 9 7 12 12 C 1.52995 * 109.47258 * 85.00376 * 10 9 7 13 13 C 1.52999 * 117.49949 * 8.61528 * 12 10 9 14 14 C 1.53002 * 60.00192 * 252.51434 * 13 12 10 15 15 C 1.53004 * 109.46824 * 204.99960 * 10 9 7 16 16 C 1.53778 * 113.61462 * 159.13488 * 15 10 9 17 17 C 1.53954 * 87.02168 * 220.05253 * 16 15 10 18 18 C 1.53782 * 87.11047 * 25.36238 * 17 16 15 19 19 H 0.97000 * 120.00663 * 0.02562 * 1 2 3 20 20 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 21 21 H 1.08997 * 115.55360 * 154.32975 * 12 10 9 22 22 H 1.08995 * 117.49974 * 0.02562 * 13 12 10 23 23 H 1.09008 * 117.49715 * 145.02456 * 13 12 10 24 24 H 1.08999 * 117.49973 * 252.51065 * 14 13 12 25 25 H 1.08996 * 117.51465 * 107.47926 * 14 13 12 26 26 H 1.09002 * 112.85038 * 290.33600 * 15 10 9 27 27 H 1.08999 * 113.61493 * 334.57121 * 16 15 10 28 28 H 1.08998 * 113.61369 * 105.46740 * 16 15 10 29 29 H 1.09001 * 113.53392 * 270.81014 * 17 16 15 30 30 H 1.08995 * 113.67065 * 139.93359 * 17 16 15 31 31 H 1.09001 * 113.61208 * 220.09077 * 18 17 16 32 32 H 1.08996 * 113.69149 * 89.20547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0053 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0076 11 1 3.5645 -3.2034 0.6005 12 6 4.2589 -2.9823 -1.4268 13 6 3.8360 -2.0435 -2.5584 14 6 2.9757 -3.2605 -2.2123 15 6 5.4991 -2.2557 0.6167 16 6 6.1500 -3.5476 1.1382 17 6 6.6501 -2.7176 2.3345 18 6 5.4627 -1.7749 2.0770 19 1 -0.4851 0.8400 -0.0004 20 1 3.8646 -0.3620 -0.0029 21 1 5.1115 -3.6369 -1.6076 22 1 3.4536 -1.0612 -2.2810 23 1 4.4106 -2.0801 -3.4840 24 1 2.9843 -4.0978 -2.9102 25 1 2.0271 -3.0793 -1.7071 26 1 6.1546 -1.6634 -0.0217 27 1 5.4305 -4.3192 1.4124 28 1 6.9505 -3.9217 0.4999 29 1 7.6214 -2.2526 2.1660 30 1 6.5912 -3.2438 3.2873 31 1 5.7093 -0.7198 2.1956 32 1 4.5544 -2.0595 2.6080 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324764939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:24 Heat of formation + Delta-G solvation = 52.785839 kcal Electronic energy + Delta-G solvation = -12726.456839 eV Core-core repulsion = 10688.707888 eV Total energy + Delta-G solvation = -2037.748951 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94693 -36.52717 -33.37104 -31.02604 -27.78795 -25.25520 -23.30952 -22.33872 -21.43487 -19.17175 -19.07953 -17.43547 -15.54564 -14.87676 -14.48622 -14.34744 -13.57023 -13.07151 -12.60282 -12.06907 -11.85765 -11.60445 -11.45634 -10.95974 -10.71581 -10.51218 -10.26615 -10.12800 -10.01025 -9.86151 -9.44207 -9.36392 -8.99305 -8.83718 -7.20633 -5.73077 -3.06945 3.39591 3.43304 3.47756 4.62160 4.65094 4.91347 5.00820 5.10404 5.23277 5.55622 5.62654 5.73455 5.83873 5.90012 5.91837 5.98100 6.11841 6.13999 6.28283 6.35512 6.43845 6.50545 6.55040 6.73662 6.77256 7.04806 7.12562 7.22714 8.05447 8.46616 9.26145 9.98989 10.20213 11.45413 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.014032 C = 0.011124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.279381 B = 1995.016434 C = 2516.563299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.742 5.742 10 C 0.219 3.781 11 H 0.057 0.943 12 C -0.175 4.175 13 C -0.168 4.168 14 C -0.176 4.176 15 C -0.112 4.112 16 C -0.131 4.131 17 C -0.146 4.146 18 C -0.126 4.126 19 H 0.258 0.742 20 H 0.361 0.639 21 H 0.084 0.916 22 H 0.109 0.891 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.998 -5.117 0.599 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.710 3.290 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.384 5.384 10 C 0.109 3.891 11 H 0.075 0.925 12 C -0.196 4.196 13 C -0.205 4.205 14 C -0.213 4.213 15 C -0.131 4.131 16 C -0.169 4.169 17 C -0.184 4.184 18 C -0.164 4.164 19 H 0.068 0.932 20 H 0.193 0.807 21 H 0.102 0.898 22 H 0.127 0.873 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.736 -5.171 0.620 12.840 hybrid contribution 0.550 1.261 -0.169 1.386 sum 12.286 -3.910 0.451 12.901 Atomic orbital electron populations 1.69688 1.05070 1.25653 1.57944 1.24632 0.95141 0.96973 1.02408 0.86625 0.79319 0.85360 0.77739 1.21216 1.21972 1.20264 1.19051 0.80629 0.94456 1.42277 0.89169 1.42745 1.03815 1.02065 1.89758 1.19727 0.89660 0.88652 0.91035 0.92534 1.23161 0.97503 1.03059 0.95832 1.22808 1.03407 0.97255 0.97037 1.22884 0.96810 0.98520 1.03081 1.22746 0.97564 0.96941 0.95883 1.22902 0.99850 0.96821 0.97313 1.22881 0.98366 0.98836 0.98285 1.22793 0.98085 0.98704 0.96779 0.93192 0.80659 0.89803 0.87318 0.91398 0.91142 0.87464 0.90039 0.90162 0.92184 0.90923 0.92048 0.92277 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.13 13.97 55.49 0.78 -28.36 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.06 27.73 -169.99 -4.71 17.34 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.23 -6.36 8.63 -15.06 -0.13 -6.49 16 8 H 0.09 2.65 7.14 -52.48 -0.37 2.27 16 9 N -0.74 -16.98 3.23 -53.43 -0.17 -17.15 16 10 C 0.22 4.18 2.44 -67.93 -0.17 4.02 16 11 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 12 C -0.17 -3.15 5.69 -90.62 -0.52 -3.66 16 13 C -0.17 -3.22 9.74 -26.73 -0.26 -3.48 16 14 C -0.18 -3.37 9.86 -26.73 -0.26 -3.63 16 15 C -0.11 -1.79 3.16 -89.81 -0.28 -2.07 16 16 C -0.13 -1.73 7.63 -25.83 -0.20 -1.93 16 17 C -0.15 -1.86 8.09 -25.83 -0.21 -2.07 16 18 C -0.13 -1.97 7.43 -25.92 -0.19 -2.16 16 19 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 20 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 21 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 22 H 0.11 2.41 6.68 -51.93 -0.35 2.06 16 23 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.11 2.39 6.23 -51.93 -0.32 2.06 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 256.97 15.07 3.87 3.87 Total: -1.00 -29.15 256.97 -7.62 -36.77 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.07 Total: 8.98 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.31 Total: -21.46 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.60 Total: -45.51 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.15 -7.62 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324764939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.558 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds