Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99951 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99799 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99701 * 359.73557 * 7 2 1 9 9 N 1.36935 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.09002 * 109.47048 * 324.99821 * 10 9 7 12 12 C 1.52995 * 109.47258 * 85.00376 * 10 9 7 13 13 C 1.52999 * 117.49949 * 8.61528 * 12 10 9 14 14 C 1.53002 * 60.00192 * 252.51434 * 13 12 10 15 15 C 1.53004 * 109.46824 * 204.99960 * 10 9 7 16 16 C 1.53778 * 113.61462 * 159.13488 * 15 10 9 17 17 C 1.53954 * 87.02168 * 220.05253 * 16 15 10 18 18 C 1.53782 * 87.11047 * 25.36238 * 17 16 15 19 19 H 0.97000 * 120.00663 * 0.02562 * 1 2 3 20 20 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 21 21 H 1.08997 * 115.55360 * 154.32975 * 12 10 9 22 22 H 1.08995 * 117.49974 * 0.02562 * 13 12 10 23 23 H 1.09008 * 117.49715 * 145.02456 * 13 12 10 24 24 H 1.08999 * 117.49973 * 252.51065 * 14 13 12 25 25 H 1.08996 * 117.51465 * 107.47926 * 14 13 12 26 26 H 1.09002 * 112.85038 * 290.33600 * 15 10 9 27 27 H 1.08999 * 113.61493 * 334.57121 * 16 15 10 28 28 H 1.08998 * 113.61369 * 105.46740 * 16 15 10 29 29 H 1.09001 * 113.53392 * 270.81014 * 17 16 15 30 30 H 1.08995 * 113.67065 * 139.93359 * 17 16 15 31 31 H 1.09001 * 113.61208 * 220.09077 * 18 17 16 32 32 H 1.08996 * 113.69149 * 89.20547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0053 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0076 11 1 3.5645 -3.2034 0.6005 12 6 4.2589 -2.9823 -1.4268 13 6 3.8360 -2.0435 -2.5584 14 6 2.9757 -3.2605 -2.2123 15 6 5.4991 -2.2557 0.6167 16 6 6.1500 -3.5476 1.1382 17 6 6.6501 -2.7176 2.3345 18 6 5.4627 -1.7749 2.0770 19 1 -0.4851 0.8400 -0.0004 20 1 3.8646 -0.3620 -0.0029 21 1 5.1115 -3.6369 -1.6076 22 1 3.4536 -1.0612 -2.2810 23 1 4.4106 -2.0801 -3.4840 24 1 2.9843 -4.0978 -2.9102 25 1 2.0271 -3.0793 -1.7071 26 1 6.1546 -1.6634 -0.0217 27 1 5.4305 -4.3192 1.4124 28 1 6.9505 -3.9217 0.4999 29 1 7.6214 -2.2526 2.1660 30 1 6.5912 -3.2438 3.2873 31 1 5.7093 -0.7198 2.1956 32 1 4.5544 -2.0595 2.6080 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324764939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = 36.005367 kcal Electronic energy + Delta-G solvation = -12727.184495 eV Core-core repulsion = 10688.707888 eV Total energy + Delta-G solvation = -2038.476607 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29198 -37.96408 -35.31471 -33.03901 -29.42915 -26.43560 -24.98710 -23.94927 -23.00578 -20.80782 -20.33525 -19.37530 -16.98523 -16.51505 -16.09340 -15.96722 -15.11406 -14.72402 -14.44062 -13.69315 -13.21989 -13.03531 -12.94233 -12.74068 -12.37220 -12.07245 -12.02836 -11.66819 -11.54634 -11.22668 -11.07077 -10.99629 -10.72458 -10.44499 -9.24177 -7.97103 -5.27507 1.37371 1.39268 1.46596 2.50738 3.11849 3.34678 3.54125 3.86742 3.92088 4.04442 4.19427 4.27685 4.36796 4.37240 4.72141 4.83403 4.88516 4.94397 4.99288 5.00964 5.15861 5.17332 5.23481 5.26945 5.47865 5.54525 5.62086 5.77074 5.87546 6.27282 7.14253 7.91976 8.11034 9.24945 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.014032 C = 0.011124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.279381 B = 1995.016434 C = 2516.563299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.066 4.066 3 Si 0.945 3.055 4 H -0.282 1.282 5 H -0.302 1.302 6 H -0.253 1.253 7 C -0.205 4.205 8 H 0.056 0.944 9 N -0.741 5.741 10 C 0.211 3.789 11 H 0.038 0.962 12 C -0.158 4.158 13 C -0.171 4.171 14 C -0.187 4.187 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.138 4.138 19 H 0.254 0.746 20 H 0.363 0.637 21 H 0.120 0.880 22 H 0.074 0.926 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.347 -5.601 0.320 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.257 4.257 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.177 1.177 7 C -0.336 4.336 8 H 0.074 0.926 9 N -0.383 5.383 10 C 0.103 3.897 11 H 0.056 0.944 12 C -0.178 4.178 13 C -0.208 4.208 14 C -0.224 4.224 15 C -0.132 4.132 16 C -0.159 4.159 17 C -0.167 4.167 18 C -0.176 4.176 19 H 0.063 0.937 20 H 0.196 0.804 21 H 0.138 0.862 22 H 0.093 0.907 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.147 -5.689 0.345 16.184 hybrid contribution -0.517 1.296 -0.083 1.398 sum 14.630 -4.393 0.262 15.278 Atomic orbital electron populations 1.69871 1.07039 1.26180 1.60858 1.25360 0.95905 1.00698 1.03724 0.85538 0.78737 0.80503 0.77826 1.20871 1.22900 1.17723 1.18938 0.82545 0.92908 1.39199 0.92600 1.42723 1.02216 1.03807 1.89572 1.19963 0.91158 0.86484 0.92067 0.94413 1.23150 0.97728 1.02641 0.94312 1.22765 1.03763 0.95430 0.98816 1.22810 0.95520 0.99895 1.04176 1.22759 0.95439 0.99261 0.95730 1.22864 1.00045 0.95448 0.97534 1.22829 0.97704 0.97505 0.98710 1.22817 0.98823 0.99261 0.96677 0.93739 0.80380 0.86201 0.90738 0.88302 0.88239 0.91746 0.89011 0.90474 0.89798 0.89020 0.90921 0.92690 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.95 46.26 27.73 68.60 1.90 48.16 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 7 C -0.20 -11.47 8.63 84.03 0.73 -10.74 16 8 H 0.06 3.48 7.14 -2.91 -0.02 3.46 16 9 N -0.74 -33.81 3.23 -322.94 -1.04 -34.86 16 10 C 0.21 7.84 2.44 44.99 0.11 7.95 16 11 H 0.04 1.55 7.92 -2.39 -0.02 1.53 16 12 C -0.16 -5.32 5.69 -10.79 -0.06 -5.38 16 13 C -0.17 -6.23 9.74 30.59 0.30 -5.93 16 14 C -0.19 -7.01 9.86 30.60 0.30 -6.71 16 15 C -0.11 -3.27 3.16 -10.27 -0.03 -3.30 16 16 C -0.12 -2.73 7.63 31.18 0.24 -2.49 16 17 C -0.13 -2.81 8.09 31.18 0.25 -2.56 16 18 C -0.14 -4.04 7.43 31.12 0.23 -3.80 16 19 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 20 H 0.36 16.27 5.66 -92.70 -0.52 15.75 16 21 H 0.12 3.27 8.11 -2.39 -0.02 3.25 16 22 H 0.07 3.27 6.68 -2.39 -0.02 3.25 16 23 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 24 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 25 H 0.06 2.98 6.23 -2.39 -0.01 2.97 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -64.99 256.97 4.19 -60.79 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.50 Total: 26.08 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 2.53 Total: -36.42 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -0.74 Total: -98.61 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.90 Total: 48.16 kcal Total: -64.99 4.19 -60.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324764939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.797 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds