Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00242 * 2 1 4 4 H 1.48502 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47379 * 120.00236 * 3 2 1 6 6 H 1.48509 * 109.47025 * 240.00372 * 3 2 1 7 7 C 1.38815 * 119.99645 * 180.27901 * 2 1 3 8 8 H 1.07998 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00211 * 152.23393 * 9 7 2 11 11 C 1.52997 * 112.85237 * 173.75584 * 10 9 7 12 12 C 1.53780 * 113.61321 * 48.80697 * 11 10 9 13 13 C 1.53954 * 87.01791 * 220.04537 * 12 11 10 14 14 C 1.53779 * 113.61434 * 311.19582 * 11 10 9 15 15 C 1.53787 * 113.61203 * 42.55912 * 10 9 7 16 16 C 1.54047 * 86.98511 * 270.84137 * 15 10 9 17 17 C 1.53775 * 87.07806 * 334.56777 * 16 15 10 18 18 H 0.97000 * 119.99675 * 359.71825 * 1 2 3 19 19 H 0.97005 * 120.00009 * 332.24015 * 9 7 2 20 20 H 1.08999 * 112.84966 * 180.02562 * 11 10 9 21 21 H 1.08994 * 113.61478 * 334.56793 * 12 11 10 22 22 H 1.09001 * 113.61720 * 105.47117 * 12 11 10 23 23 H 1.08997 * 113.54104 * 270.80791 * 13 12 11 24 24 H 1.09009 * 113.74011 * 139.94140 * 13 12 11 25 25 H 1.08999 * 113.61962 * 254.52540 * 14 11 10 26 26 H 1.08997 * 113.61514 * 25.35535 * 14 11 10 27 27 H 1.09002 * 113.61279 * 25.43867 * 15 10 9 28 28 H 1.09000 * 113.61136 * 156.33557 * 15 10 9 29 29 H 1.09008 * 113.61565 * 220.01925 * 16 15 10 30 30 H 1.08997 * 113.69187 * 89.12952 * 16 15 10 31 31 H 1.09001 * 113.61821 * 270.88162 * 17 16 15 32 32 H 1.08996 * 113.61598 * 139.97964 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1040 1.6963 -1.2126 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0063 9 7 1.3255 -2.3880 -0.0111 10 6 1.9311 -3.5810 -0.6079 11 6 1.0949 -4.8437 -0.3910 12 6 -0.3916 -4.6660 -0.7427 13 6 -0.7050 -5.5120 0.5049 14 6 0.6477 -5.0436 1.0667 15 6 3.4177 -3.7587 -0.2563 16 6 3.7303 -2.9106 -1.5037 17 6 2.3784 -3.3811 -2.0656 18 1 -0.4850 0.8401 0.0041 19 1 0.4393 -2.4382 0.3803 20 1 1.5457 -5.7314 -0.8347 21 1 -0.7374 -3.6350 -0.6693 22 1 -0.6790 -5.1443 -1.6791 23 1 -0.7478 -6.5827 0.3053 24 1 -1.5623 -5.1530 1.0745 25 1 1.1981 -5.8261 1.5890 26 1 0.5879 -4.1161 1.6361 27 1 3.7047 -3.2817 0.6809 28 1 3.7638 -4.7895 -0.3311 29 1 4.5883 -3.2698 -2.0722 30 1 3.7720 -1.8396 -1.3060 31 1 2.4409 -4.3090 -2.6342 32 1 1.8269 -2.5996 -2.5882 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335412820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = 50.790591 kcal Electronic energy + Delta-G solvation = -12968.823646 eV Core-core repulsion = 10930.988174 eV Total energy + Delta-G solvation = -2037.835472 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.41452 -36.53528 -32.88235 -29.76806 -26.74543 -25.36410 -24.24302 -23.50970 -21.66374 -18.71364 -17.97453 -17.30824 -15.05699 -15.00055 -14.43918 -13.89784 -12.94463 -12.77453 -12.47859 -11.91767 -11.85457 -11.60084 -10.98573 -10.92632 -10.81836 -10.70928 -10.45402 -10.07322 -9.88454 -9.79862 -9.55361 -9.15380 -8.73614 -8.49104 -6.70434 -5.79181 -3.15440 3.42597 3.47764 3.48293 4.57903 5.11639 5.25103 5.31747 5.39267 5.50788 5.66754 5.73910 5.82638 5.94961 6.10763 6.24580 6.27661 6.39675 6.45314 6.49140 6.57570 6.59432 6.68636 6.81942 6.87666 7.11088 7.16481 7.31891 7.44773 7.89683 8.53766 9.53428 10.13804 10.55902 11.41493 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.013242 C = 0.011008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.839291 B = 2113.941324 C = 2542.906457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.000 4.000 3 Si 0.898 3.102 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.693 5.693 10 C 0.200 3.800 11 C -0.098 4.098 12 C -0.133 4.133 13 C -0.147 4.147 14 C -0.131 4.131 15 C -0.156 4.156 16 C -0.140 4.140 17 C -0.158 4.158 18 H 0.255 0.745 19 H 0.378 0.622 20 H 0.080 0.920 21 H 0.094 0.906 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -8.974 -0.717 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.198 4.198 3 Si 0.728 3.272 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.107 3.893 11 C -0.117 4.117 12 C -0.171 4.171 13 C -0.184 4.184 14 C -0.169 4.169 15 C -0.196 4.196 16 C -0.177 4.177 17 C -0.198 4.198 18 H 0.065 0.935 19 H 0.213 0.787 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.041 -8.796 -0.772 9.063 hybrid contribution 0.247 0.953 -0.036 0.985 sum 2.287 -7.843 -0.808 8.210 Atomic orbital electron populations 1.69743 1.05290 1.25759 1.55805 1.25124 0.95400 0.97913 1.01357 0.86432 0.78864 0.83870 0.78013 1.21735 1.21123 1.21017 1.19231 0.91149 0.83581 1.43895 0.90919 1.41981 1.19563 1.04526 1.67202 1.20384 0.90168 0.87255 0.91504 1.22548 0.95267 0.97479 0.96419 1.22940 0.96334 1.01181 0.96599 1.22875 0.97994 0.99009 0.98539 1.22882 0.95909 1.01382 0.96722 1.23461 0.99825 0.97943 0.98339 1.23004 0.95885 1.01709 0.97107 1.23462 0.97691 0.99403 0.99262 0.93531 0.78666 0.90161 0.88755 0.92681 0.91271 0.92007 0.92725 0.89162 0.91925 0.92160 0.94309 0.88424 0.92568 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 13.26 55.49 0.74 -26.55 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 3 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.65 8.21 -15.06 -0.12 -6.78 16 8 H 0.07 1.92 5.06 -52.49 -0.27 1.65 16 9 N -0.69 -16.98 4.60 -46.48 -0.21 -17.19 16 10 C 0.20 4.08 1.20 -131.01 -0.16 3.92 16 11 C -0.10 -1.71 3.30 -89.81 -0.30 -2.00 16 12 C -0.13 -2.28 7.43 -25.83 -0.19 -2.47 16 13 C -0.15 -2.20 8.09 -25.82 -0.21 -2.41 16 14 C -0.13 -2.17 7.43 -25.92 -0.19 -2.36 16 15 C -0.16 -3.00 6.92 -25.78 -0.18 -3.18 16 16 C -0.14 -2.76 7.44 -25.78 -0.19 -2.95 16 17 C -0.16 -3.17 7.20 -25.92 -0.19 -3.36 16 18 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 19 H 0.38 9.73 5.91 -40.82 -0.24 9.49 16 20 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 21 H 0.09 1.91 6.72 -51.93 -0.35 1.56 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.69 6.97 -51.93 -0.36 1.33 16 27 H 0.06 1.29 7.84 -51.93 -0.41 0.88 16 28 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.10 2.16 5.36 -51.93 -0.28 1.88 16 31 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 250.79 15.07 3.78 3.78 Total: -1.00 -28.14 250.79 -7.38 -35.53 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.84 Total: 9.08 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -1.82 Total: -21.69 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.52 Total: -43.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.14 -7.38 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335412820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.316 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds