Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00242 * 2 1 4 4 H 1.48502 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47379 * 120.00236 * 3 2 1 6 6 H 1.48509 * 109.47025 * 240.00372 * 3 2 1 7 7 C 1.38815 * 119.99645 * 180.27901 * 2 1 3 8 8 H 1.07998 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00211 * 152.23393 * 9 7 2 11 11 C 1.52997 * 112.85237 * 173.75584 * 10 9 7 12 12 C 1.53780 * 113.61321 * 48.80697 * 11 10 9 13 13 C 1.53954 * 87.01791 * 220.04537 * 12 11 10 14 14 C 1.53779 * 113.61434 * 311.19582 * 11 10 9 15 15 C 1.53787 * 113.61203 * 42.55912 * 10 9 7 16 16 C 1.54047 * 86.98511 * 270.84137 * 15 10 9 17 17 C 1.53775 * 87.07806 * 334.56777 * 16 15 10 18 18 H 0.97000 * 119.99675 * 359.71825 * 1 2 3 19 19 H 0.97005 * 120.00009 * 332.24015 * 9 7 2 20 20 H 1.08999 * 112.84966 * 180.02562 * 11 10 9 21 21 H 1.08994 * 113.61478 * 334.56793 * 12 11 10 22 22 H 1.09001 * 113.61720 * 105.47117 * 12 11 10 23 23 H 1.08997 * 113.54104 * 270.80791 * 13 12 11 24 24 H 1.09009 * 113.74011 * 139.94140 * 13 12 11 25 25 H 1.08999 * 113.61962 * 254.52540 * 14 11 10 26 26 H 1.08997 * 113.61514 * 25.35535 * 14 11 10 27 27 H 1.09002 * 113.61279 * 25.43867 * 15 10 9 28 28 H 1.09000 * 113.61136 * 156.33557 * 15 10 9 29 29 H 1.09008 * 113.61565 * 220.01925 * 16 15 10 30 30 H 1.08997 * 113.69187 * 89.12952 * 16 15 10 31 31 H 1.09001 * 113.61821 * 270.88162 * 17 16 15 32 32 H 1.08996 * 113.61598 * 139.97964 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1040 1.6963 -1.2126 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0063 9 7 1.3255 -2.3880 -0.0111 10 6 1.9311 -3.5810 -0.6079 11 6 1.0949 -4.8437 -0.3910 12 6 -0.3916 -4.6660 -0.7427 13 6 -0.7050 -5.5120 0.5049 14 6 0.6477 -5.0436 1.0667 15 6 3.4177 -3.7587 -0.2563 16 6 3.7303 -2.9106 -1.5037 17 6 2.3784 -3.3811 -2.0656 18 1 -0.4850 0.8401 0.0041 19 1 0.4393 -2.4382 0.3803 20 1 1.5457 -5.7314 -0.8347 21 1 -0.7374 -3.6350 -0.6693 22 1 -0.6790 -5.1443 -1.6791 23 1 -0.7478 -6.5827 0.3053 24 1 -1.5623 -5.1530 1.0745 25 1 1.1981 -5.8261 1.5890 26 1 0.5879 -4.1161 1.6361 27 1 3.7047 -3.2817 0.6809 28 1 3.7638 -4.7895 -0.3311 29 1 4.5883 -3.2698 -2.0722 30 1 3.7720 -1.8396 -1.3060 31 1 2.4409 -4.3090 -2.6342 32 1 1.8269 -2.5996 -2.5882 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335412820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = 34.758298 kcal Electronic energy + Delta-G solvation = -12969.518858 eV Core-core repulsion = 10930.988174 eV Total energy + Delta-G solvation = -2038.530684 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93909 -37.98529 -34.90183 -31.73464 -28.33428 -26.80138 -25.72882 -25.39958 -23.19502 -20.11918 -19.62419 -19.26073 -16.74207 -16.58427 -16.07144 -15.62524 -14.68975 -14.50553 -14.01737 -13.54479 -13.34704 -13.10380 -12.78820 -12.70599 -12.40431 -12.32916 -12.16435 -12.00698 -11.35457 -11.23285 -11.18893 -10.76835 -10.50730 -10.20508 -8.69348 -7.93232 -5.28480 1.44748 1.46478 1.52149 2.54968 3.35845 3.77248 3.87805 3.93218 4.02627 4.11199 4.20167 4.25307 4.47421 4.75048 4.86963 4.94390 4.99281 5.02806 5.07312 5.12799 5.18227 5.21020 5.24205 5.44047 5.48753 5.54150 5.71943 5.88772 5.92958 6.44788 7.38591 8.18511 8.48329 9.28429 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.013242 C = 0.011008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.839291 B = 2113.941324 C = 2542.906457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.957 3.043 4 H -0.297 1.297 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.705 5.705 10 C 0.183 3.817 11 C -0.095 4.095 12 C -0.139 4.139 13 C -0.131 4.131 14 C -0.132 4.132 15 C -0.144 4.144 16 C -0.141 4.141 17 C -0.154 4.154 18 H 0.248 0.752 19 H 0.367 0.633 20 H 0.112 0.888 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -11.155 -1.044 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.224 1.224 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.343 5.343 10 C 0.092 3.908 11 C -0.113 4.113 12 C -0.177 4.177 13 C -0.168 4.168 14 C -0.170 4.170 15 C -0.183 4.183 16 C -0.178 4.178 17 C -0.194 4.194 18 H 0.057 0.943 19 H 0.201 0.799 20 H 0.130 0.870 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.119 0.881 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.353 -11.003 -1.107 11.556 hybrid contribution -0.113 1.548 0.054 1.553 sum 3.240 -9.455 -1.053 10.050 Atomic orbital electron populations 1.69899 1.06668 1.25814 1.58371 1.25827 0.96146 1.01056 1.02648 0.85470 0.77561 0.80102 0.78219 1.22377 1.20359 1.20477 1.19579 0.91504 0.84602 1.41279 0.90505 1.42129 1.19073 1.05347 1.67786 1.20694 0.91471 0.87043 0.91587 1.22632 0.94695 0.96807 0.97207 1.22856 0.96703 0.99507 0.98612 1.22845 0.97010 1.00322 0.96606 1.22799 0.97341 1.00674 0.96152 1.23405 0.98312 0.99611 0.97018 1.22917 0.96894 1.00083 0.97899 1.23442 0.97330 0.99787 0.98814 0.94288 0.79936 0.87009 0.92892 0.91103 0.88057 0.92246 0.90419 0.92437 0.93815 0.88579 0.91303 0.91555 0.89189 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.97 13.26 21.65 0.29 -58.68 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.96 46.42 29.55 68.60 2.03 48.45 16 4 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.24 -13.03 8.21 84.03 0.69 -12.34 16 8 H 0.08 4.10 5.06 -2.91 -0.01 4.08 16 9 N -0.70 -35.20 4.60 -300.97 -1.39 -36.58 16 10 C 0.18 7.25 1.20 4.13 0.00 7.26 16 11 C -0.09 -3.04 3.30 -10.27 -0.03 -3.07 16 12 C -0.14 -4.59 7.43 31.18 0.23 -4.36 16 13 C -0.13 -3.58 8.09 31.18 0.25 -3.33 16 14 C -0.13 -4.08 7.43 31.12 0.23 -3.85 16 15 C -0.14 -5.17 6.92 31.21 0.22 -4.95 16 16 C -0.14 -5.28 7.44 31.21 0.23 -5.05 16 17 C -0.15 -5.92 7.20 31.12 0.22 -5.70 16 18 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 19 H 0.37 19.67 5.91 -92.70 -0.55 19.12 16 20 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 21 H 0.05 2.20 6.72 -2.39 -0.02 2.18 16 22 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.16 6.97 -2.39 -0.02 2.14 16 27 H 0.04 1.73 7.84 -2.39 -0.02 1.71 16 28 H 0.10 2.79 8.10 -2.39 -0.02 2.77 16 29 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.07 2.90 5.36 -2.39 -0.01 2.89 16 31 H 0.09 2.85 8.10 -2.39 -0.02 2.83 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -61.85 250.79 3.99 -57.86 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.55 Total: 27.53 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 2.51 Total: -38.56 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -1.10 Total: -95.27 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -61.85 3.99 -57.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335412820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.617 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds