Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.47195 * 111.00104 * 267.23288 * 11 10 9 13 13 C 1.52859 * 88.79397 * 224.37590 * 12 11 10 14 14 H 1.09001 * 115.73342 * 138.64403 * 13 12 11 15 15 C 1.53120 * 115.47761 * 276.09065 * 13 12 11 16 16 C 1.53729 * 107.24770 * 93.54636 * 15 13 12 17 17 C 1.54044 * 105.84421 * 17.62813 * 16 15 13 18 18 C 1.47828 * 111.00175 * 169.99828 * 11 10 9 19 19 H 1.09002 * 115.94420 * 16.81315 * 18 11 10 20 20 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.08993 * 113.33758 * 339.35884 * 12 11 10 26 26 H 1.09006 * 113.33750 * 109.39016 * 12 11 10 27 27 H 1.09008 * 109.88912 * 212.96049 * 15 13 12 28 28 H 1.08998 * 109.89119 * 333.97742 * 15 13 12 29 29 H 1.09005 * 110.17713 * 136.71715 * 16 15 13 30 30 H 1.08998 * 110.18152 * 258.45717 * 16 15 13 31 31 H 1.09005 * 110.38832 * 211.60085 * 17 16 15 32 32 H 1.08998 * 110.39496 * 89.20893 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4906 -2.6364 0.0022 12 6 6.0181 -2.7039 -1.3703 13 6 7.0264 -3.7507 -0.8969 14 1 7.1894 -4.5903 -1.5725 15 6 8.3037 -3.1947 -0.2612 16 6 8.0701 -3.1389 1.2572 17 6 6.8675 -4.0615 1.5320 18 6 6.0205 -3.9953 0.2430 19 1 5.3155 -4.8143 0.1002 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6587 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.2985 -3.0925 -2.0908 26 1 6.4831 -1.7748 -1.7004 27 1 9.1447 -3.8517 -0.4831 28 1 8.5038 -2.1943 -0.6449 29 1 8.9511 -3.5020 1.7867 30 1 7.8409 -2.1188 1.5652 31 1 6.2936 -3.6941 2.3828 32 1 7.2051 -5.0820 1.7126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335529125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 17.596595 kcal Electronic energy + Delta-G solvation = -12432.920837 eV Core-core repulsion = 10393.645966 eV Total energy + Delta-G solvation = -2039.274872 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62040 -34.71057 -32.85086 -30.80888 -29.09208 -26.70664 -24.42726 -23.19650 -20.29998 -20.04445 -18.34791 -16.88775 -16.01435 -15.32601 -14.51600 -14.05060 -13.78808 -13.46708 -12.78468 -12.61023 -12.16065 -11.79933 -11.23388 -11.03917 -10.96857 -10.92656 -10.73671 -10.28569 -10.10245 -9.85465 -9.75105 -9.52331 -9.17147 -8.50423 -8.28001 -6.01963 -3.99933 3.34604 3.41621 3.49285 4.27059 4.42459 4.49391 4.80684 5.20491 5.29561 5.32968 5.43484 5.54557 5.55981 5.72801 5.85619 5.90139 6.02267 6.08349 6.09039 6.18833 6.24365 6.29631 6.43536 6.52454 6.77315 6.94450 7.25915 7.49064 7.69815 7.87819 8.55747 9.01926 9.61035 11.11448 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058067 B = 0.008403 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.089956 B = 3331.352141 C = 3449.063466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.001 4.001 10 C 0.038 3.962 11 N -0.467 5.467 12 C 0.012 3.988 13 C -0.128 4.128 14 H 0.081 0.919 15 C -0.096 4.096 16 C -0.112 4.112 17 C -0.104 4.104 18 C 0.018 3.982 19 H 0.084 0.916 20 H 0.263 0.737 21 H 0.023 0.977 22 H 0.009 0.991 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.586 -7.033 -0.390 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.039 4.039 10 C -0.090 4.090 11 N -0.190 5.190 12 C -0.117 4.117 13 C -0.147 4.147 14 H 0.099 0.901 15 C -0.133 4.133 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.091 4.091 19 H 0.102 0.898 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.577 -6.352 0.068 16.822 hybrid contribution -0.215 0.257 -0.606 0.693 sum 15.362 -6.095 -0.538 16.535 Atomic orbital electron populations 1.69919 1.06315 1.26884 1.51309 1.24999 0.94715 0.99202 0.94482 0.86752 0.80529 0.83422 0.78496 1.20390 1.21437 1.18733 1.21127 0.89580 0.94453 1.50887 0.91228 1.19423 0.96133 0.91629 0.96702 1.22648 0.85673 1.00677 1.00011 1.68591 1.11368 1.22672 1.16375 1.23579 0.96679 0.98868 0.92594 1.23006 0.94975 0.98711 0.98034 0.90053 1.21550 0.95550 1.00675 0.95572 1.21949 0.97042 1.00635 0.95302 1.22020 0.95999 0.98796 0.97396 1.24155 0.96254 0.93170 0.95540 0.89834 0.92766 0.95914 0.97235 0.94660 0.91802 0.91552 0.90294 0.92400 0.91608 0.92567 0.91204 0.91288 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -15.37 9.66 -34.44 -0.33 -15.71 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 -0.03 4.37 -27.89 -0.12 -0.15 16 10 C 0.04 0.80 4.77 -3.83 -0.02 0.78 16 11 N -0.47 -8.41 5.66 -228.75 -1.30 -9.70 16 12 C 0.01 0.19 7.34 -5.49 -0.04 0.15 16 13 C -0.13 -1.66 4.99 -90.12 -0.45 -2.11 16 14 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.10 -1.13 6.40 -26.29 -0.17 -1.30 16 16 C -0.11 -1.37 6.52 -25.81 -0.17 -1.54 16 17 C -0.10 -1.35 6.65 -25.47 -0.17 -1.52 16 18 C 0.02 0.27 4.34 -67.73 -0.29 -0.03 16 19 H 0.08 1.19 7.97 -51.93 -0.41 0.78 16 20 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 21 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 22 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 23 H 0.04 0.74 7.30 -51.93 -0.38 0.36 16 24 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 25 H 0.07 1.03 7.38 -51.93 -0.38 0.65 16 26 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 254.92 15.07 3.84 3.84 Total: -1.00 -31.09 254.92 -8.52 -39.61 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -5.31 Total: -4.34 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.86 Total: -19.51 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.52 Total: -37.44 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.09 -8.52 -39.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.209 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds