Wall clock time and date at job start Mon Mar 30 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.47195 * 111.00104 * 267.23288 * 11 10 9 13 13 C 1.52859 * 88.79397 * 224.37590 * 12 11 10 14 14 H 1.09001 * 115.73342 * 138.64403 * 13 12 11 15 15 C 1.53120 * 115.47761 * 276.09065 * 13 12 11 16 16 C 1.53729 * 107.24770 * 93.54636 * 15 13 12 17 17 C 1.54044 * 105.84421 * 17.62813 * 16 15 13 18 18 C 1.47828 * 111.00175 * 169.99828 * 11 10 9 19 19 H 1.09002 * 115.94420 * 16.81315 * 18 11 10 20 20 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.08993 * 113.33758 * 339.35884 * 12 11 10 26 26 H 1.09006 * 113.33750 * 109.39016 * 12 11 10 27 27 H 1.09008 * 109.88912 * 212.96049 * 15 13 12 28 28 H 1.08998 * 109.89119 * 333.97742 * 15 13 12 29 29 H 1.09005 * 110.17713 * 136.71715 * 16 15 13 30 30 H 1.08998 * 110.18152 * 258.45717 * 16 15 13 31 31 H 1.09005 * 110.38832 * 211.60085 * 17 16 15 32 32 H 1.08998 * 110.39496 * 89.20893 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4906 -2.6364 0.0022 12 6 6.0181 -2.7039 -1.3703 13 6 7.0264 -3.7507 -0.8969 14 1 7.1894 -4.5903 -1.5725 15 6 8.3037 -3.1947 -0.2612 16 6 8.0701 -3.1389 1.2572 17 6 6.8675 -4.0615 1.5320 18 6 6.0205 -3.9953 0.2430 19 1 5.3155 -4.8143 0.1002 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6587 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.2985 -3.0925 -2.0908 26 1 6.4831 -1.7748 -1.7004 27 1 9.1447 -3.8517 -0.4831 28 1 8.5038 -2.1943 -0.6449 29 1 8.9511 -3.5020 1.7867 30 1 7.8409 -2.1188 1.5652 31 1 6.2936 -3.6941 2.3828 32 1 7.2051 -5.0820 1.7126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335529125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:43 Heat of formation + Delta-G solvation = -3.204969 kcal Electronic energy + Delta-G solvation = -12433.822861 eV Core-core repulsion = 10393.645966 eV Total energy + Delta-G solvation = -2040.176895 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80921 -36.24771 -34.77622 -32.57923 -30.32185 -28.21312 -25.75575 -24.80612 -22.14300 -21.11581 -19.49248 -18.98149 -17.31993 -16.62184 -16.37689 -15.58457 -15.19078 -14.88672 -14.54108 -14.03760 -13.73466 -13.36015 -12.85984 -12.63166 -12.40062 -12.02301 -11.90534 -11.83266 -11.63153 -11.47896 -11.20810 -11.15799 -11.06835 -10.80119 -9.66810 -8.34087 -6.38633 1.32226 1.34625 1.48548 2.33215 3.01167 3.05599 3.31544 3.76655 4.13441 4.18349 4.24162 4.35831 4.46065 4.46544 4.64945 4.71908 4.81542 4.91378 4.98474 5.04407 5.08852 5.16372 5.24538 5.28463 5.35457 5.42803 5.57416 5.60566 5.72493 6.20564 6.29329 6.68379 7.26638 8.82605 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058067 B = 0.008403 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.089956 B = 3331.352141 C = 3449.063466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.537 4.537 8 H 0.032 0.968 9 C 0.007 3.993 10 C 0.051 3.949 11 N -0.485 5.485 12 C 0.003 3.997 13 C -0.109 4.109 14 H 0.107 0.893 15 C -0.095 4.095 16 C -0.112 4.112 17 C -0.103 4.103 18 C 0.009 3.991 19 H 0.086 0.914 20 H 0.268 0.732 21 H 0.015 0.985 22 H 0.011 0.989 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.210 -7.063 -0.676 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.575 4.575 8 H 0.051 0.949 9 C -0.031 4.031 10 C -0.078 4.078 11 N -0.208 5.208 12 C -0.126 4.126 13 C -0.128 4.128 14 H 0.125 0.875 15 C -0.133 4.133 16 C -0.149 4.149 17 C -0.141 4.141 18 C -0.100 4.100 19 H 0.103 0.897 20 H 0.077 0.923 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.214 -6.398 -0.220 19.306 hybrid contribution -1.079 0.186 -0.510 1.208 sum 17.134 -6.212 -0.730 18.240 Atomic orbital electron populations 1.70057 1.08170 1.28285 1.52398 1.25971 0.95628 1.03439 0.93895 0.85627 0.79311 0.78254 0.79274 1.19004 1.20483 1.17699 1.21443 0.91925 0.93275 1.50859 0.94927 1.19277 0.93247 0.94374 0.96155 1.22341 0.88314 0.97723 0.99376 1.68555 1.08497 1.25472 1.18286 1.23692 0.97513 1.00056 0.91363 1.22995 0.94471 0.98207 0.97127 0.87529 1.21595 0.95724 1.01124 0.94811 1.21954 0.97579 0.99272 0.96103 1.22062 0.95828 1.00447 0.95793 1.24323 0.96742 0.91312 0.97597 0.89655 0.92326 0.96636 0.97021 0.95048 0.92805 0.91795 0.90273 0.89645 0.91984 0.90174 0.93400 0.93022 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 2 C 0.01 0.47 5.47 84.65 0.46 0.94 16 3 Si 0.95 46.38 27.47 68.60 1.88 48.26 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 7 C -0.54 -32.46 9.66 25.60 0.25 -32.21 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C 0.01 0.37 4.37 29.85 0.13 0.50 16 10 C 0.05 2.17 4.77 86.30 0.41 2.58 16 11 N -0.49 -17.04 5.66 -877.65 -4.97 -22.01 16 12 C 0.00 0.08 7.34 85.06 0.62 0.71 16 13 C -0.11 -2.50 4.99 -10.47 -0.05 -2.55 16 14 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.10 -1.90 6.40 30.88 0.20 -1.70 16 16 C -0.11 -2.42 6.52 31.19 0.20 -2.22 16 17 C -0.10 -2.46 6.65 31.41 0.21 -2.25 16 18 C 0.01 0.26 4.34 44.40 0.19 0.45 16 19 H 0.09 2.31 7.97 -2.39 -0.02 2.29 16 20 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 21 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 22 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 23 H 0.03 1.33 7.30 -2.39 -0.02 1.32 16 24 H 0.05 2.35 8.08 -2.39 -0.02 2.33 16 25 H 0.06 1.92 7.38 -2.39 -0.02 1.90 16 26 H 0.08 2.31 8.00 -2.38 -0.02 2.29 16 27 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.31 7.92 -2.39 -0.02 1.29 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -67.42 254.92 0.85 -66.57 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.01 Total: 3.59 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 2.63 Total: -35.76 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -4.67 Total: -82.66 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.26 kcal Total: -67.42 0.85 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.365 kcal (2) G-P(sol) polarization free energy of solvation -67.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds